Strain Fitness in Variovorax sp. SCN45 around GFF3554

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3553 and GFF3554 are separated by 35 nucleotidesGFF3554 and GFF3555 overlap by 4 nucleotides GFF3553 - FOG: TPR repeat, at 60,311 to 62,641 GFF3553 GFF3554 - FIG01121542: hypothetical protein, at 62,677 to 65,034 GFF3554 GFF3555 - Mg-chelatase subunit ChlD, at 65,031 to 66,245 GFF3555 Position (kb) 62 63 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2at 61.746 kb on - strand, within GFF3553at 61.746 kb on - strand, within GFF3553at 61.842 kb on - strand, within GFF3553at 62.048 kb on + strand, within GFF3553at 62.048 kb on + strand, within GFF3553at 62.049 kb on - strand, within GFF3553at 62.049 kb on - strand, within GFF3553at 62.228 kb on + strand, within GFF3553at 62.228 kb on + strand, within GFF3553at 62.228 kb on + strand, within GFF3553at 62.228 kb on + strand, within GFF3553at 62.228 kb on + strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.229 kb on - strand, within GFF3553at 62.277 kb on - strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.288 kb on + strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.289 kb on - strand, within GFF3553at 62.375 kb on + strand, within GFF3553at 62.375 kb on + strand, within GFF3553at 62.376 kb on - strand, within GFF3553at 62.376 kb on - strand, within GFF3553at 62.390 kb on + strand, within GFF3553at 62.390 kb on + strand, within GFF3553at 62.391 kb on - strand, within GFF3553at 62.480 kb on + strandat 62.480 kb on + strandat 62.480 kb on + strandat 62.480 kb on + strandat 62.481 kb on - strandat 62.481 kb on - strandat 62.695 kb on + strandat 62.695 kb on + strandat 62.695 kb on + strandat 62.696 kb on - strandat 62.696 kb on - strandat 62.696 kb on - strandat 62.696 kb on - strandat 62.696 kb on - strandat 62.696 kb on - strandat 62.893 kb on + strandat 62.893 kb on + strandat 62.893 kb on + strandat 62.893 kb on + strandat 62.893 kb on + strandat 62.894 kb on - strandat 62.894 kb on - strandat 62.894 kb on - strandat 62.894 kb on - strandat 62.894 kb on - strandat 62.894 kb on - strandat 62.894 kb on - strandat 63.193 kb on + strand, within GFF3554at 63.372 kb on - strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.529 kb on + strand, within GFF3554at 63.530 kb on - strand, within GFF3554at 63.530 kb on - strand, within GFF3554at 63.530 kb on - strand, within GFF3554at 63.530 kb on - strand, within GFF3554at 63.587 kb on - strand, within GFF3554at 63.587 kb on - strand, within GFF3554at 63.587 kb on - strand, within GFF3554at 64.186 kb on + strand, within GFF3554at 65.190 kb on + strand, within GFF3555at 65.190 kb on + strand, within GFF3555at 65.190 kb on + strand, within GFF3555at 65.191 kb on - strand, within GFF3555at 65.292 kb on + strand, within GFF3555at 65.292 kb on + strand, within GFF3555at 65.292 kb on + strand, within GFF3555at 65.292 kb on + strand, within GFF3555at 65.292 kb on + strand, within GFF3555at 65.293 kb on - strand, within GFF3555at 65.637 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.751 kb on + strand, within GFF3555at 65.752 kb on - strand, within GFF3555at 65.752 kb on - strand, within GFF3555at 65.752 kb on - strand, within GFF3555at 65.920 kb on - strand, within GFF3555at 65.920 kb on - strand, within GFF3555at 65.920 kb on - strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.979 kb on + strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 65.980 kb on - strand, within GFF3555at 65.980 kb on - strand, within GFF3555

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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61,746 - GFF3553 0.62 -0.3
61,746 - GFF3553 0.62 -0.0
61,842 - GFF3553 0.66 -1.1
62,048 + GFF3553 0.75 +0.2
62,048 + GFF3553 0.75 +0.7
62,049 - GFF3553 0.75 -1.0
62,049 - GFF3553 0.75 -0.1
62,228 + GFF3553 0.82 -0.9
62,228 + GFF3553 0.82 -0.8
62,228 + GFF3553 0.82 +0.2
62,228 + GFF3553 0.82 -0.5
62,228 + GFF3553 0.82 +0.1
62,229 - GFF3553 0.82 +2.0
62,229 - GFF3553 0.82 -1.4
62,229 - GFF3553 0.82 -0.4
62,229 - GFF3553 0.82 +0.1
62,229 - GFF3553 0.82 -1.3
62,229 - GFF3553 0.82 +1.1
62,277 - GFF3553 0.84 -0.6
62,288 + GFF3553 0.85 -1.3
62,288 + GFF3553 0.85 -0.1
62,288 + GFF3553 0.85 +0.5
62,288 + GFF3553 0.85 -0.4
62,288 + GFF3553 0.85 +0.2
62,288 + GFF3553 0.85 -0.6
62,288 + GFF3553 0.85 -1.4
62,288 + GFF3553 0.85 -2.3
62,288 + GFF3553 0.85 +0.4
62,288 + GFF3553 0.85 +0.1
62,288 + GFF3553 0.85 +0.8
62,289 - GFF3553 0.85 -1.0
62,289 - GFF3553 0.85 -0.0
62,289 - GFF3553 0.85 -1.3
62,289 - GFF3553 0.85 -0.2
62,289 - GFF3553 0.85 -0.0
62,289 - GFF3553 0.85 -0.1
62,289 - GFF3553 0.85 -0.4
62,289 - GFF3553 0.85 +0.6
62,289 - GFF3553 0.85 -0.1
62,289 - GFF3553 0.85 +0.4
62,375 + GFF3553 0.89 +1.2
62,375 + GFF3553 0.89 -0.2
62,376 - GFF3553 0.89 -1.2
62,376 - GFF3553 0.89 +0.0
62,390 + GFF3553 0.89 -0.6
62,390 + GFF3553 0.89 +0.2
62,391 - GFF3553 0.89 +0.4
62,480 + -2.4
62,480 + +0.6
62,480 + +0.1
62,480 + -0.2
62,481 - -0.1
62,481 - -0.7
62,695 + +0.1
62,695 + +0.5
62,695 + +0.4
62,696 - +0.5
62,696 - -0.1
62,696 - -0.4
62,696 - -0.7
62,696 - -1.3
62,696 - -0.4
62,893 + -0.6
62,893 + +0.0
62,893 + +0.6
62,893 + -0.1
62,893 + -0.3
62,894 - +0.7
62,894 - -1.3
62,894 - +0.0
62,894 - -1.5
62,894 - +0.2
62,894 - -0.5
62,894 - -1.3
63,193 + GFF3554 0.22 +0.2
63,372 - GFF3554 0.29 +1.2
63,529 + GFF3554 0.36 -0.6
63,529 + GFF3554 0.36 -1.8
63,529 + GFF3554 0.36 -0.2
63,529 + GFF3554 0.36 +0.4
63,529 + GFF3554 0.36 -0.4
63,529 + GFF3554 0.36 -0.6
63,529 + GFF3554 0.36 -0.6
63,530 - GFF3554 0.36 +0.6
63,530 - GFF3554 0.36 +1.2
63,530 - GFF3554 0.36 -0.8
63,530 - GFF3554 0.36 -1.3
63,587 - GFF3554 0.39 -0.0
63,587 - GFF3554 0.39 -0.1
63,587 - GFF3554 0.39 -1.0
64,186 + GFF3554 0.64 -2.0
65,190 + GFF3555 0.13 -0.2
65,190 + GFF3555 0.13 -0.4
65,190 + GFF3555 0.13 -0.0
65,191 - GFF3555 0.13 +0.3
65,292 + GFF3555 0.21 -0.3
65,292 + GFF3555 0.21 -0.5
65,292 + GFF3555 0.21 -0.3
65,292 + GFF3555 0.21 -0.3
65,292 + GFF3555 0.21 +0.8
65,293 - GFF3555 0.22 -0.3
65,637 + GFF3555 0.50 -0.9
65,751 + GFF3555 0.59 +2.1
65,751 + GFF3555 0.59 -0.4
65,751 + GFF3555 0.59 +1.4
65,751 + GFF3555 0.59 +0.0
65,751 + GFF3555 0.59 -0.5
65,751 + GFF3555 0.59 +1.5
65,752 - GFF3555 0.59 -0.6
65,752 - GFF3555 0.59 -0.3
65,752 - GFF3555 0.59 -0.6
65,920 - GFF3555 0.73 +0.6
65,920 - GFF3555 0.73 +0.7
65,920 - GFF3555 0.73 +0.2
65,979 + GFF3555 0.78 -0.1
65,979 + GFF3555 0.78 +0.1
65,979 + GFF3555 0.78 -1.5
65,979 + GFF3555 0.78 +1.4
65,979 + GFF3555 0.78 +0.8
65,979 + GFF3555 0.78 -1.8
65,979 + GFF3555 0.78 -0.6
65,979 + GFF3555 0.78 -0.0
65,980 - GFF3555 0.78 +0.3
65,980 - GFF3555 0.78 +0.2
65,980 - GFF3555 0.78 -1.5
65,980 - GFF3555 0.78 -1.0

Or see this region's nucleotide sequence