Strain Fitness in Variovorax sp. SCN45 around GFF3495

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
241	+				-0.4
242	-				+0.2
308	-		GFF3495	0.10	+1.1
830	-		GFF3495	0.73	+2.1
830	-		GFF3495	0.73	+0.2
1,179	+				-0.2
1,204	-				-0.0
1,405	-		GFF3496	0.18	+0.8
1,460	+		GFF3496	0.21	-0.9
1,551	+		GFF3496	0.26	+0.1
1,551	+		GFF3496	0.26	-1.3
1,551	+		GFF3496	0.26	+2.2
1,551	+		GFF3496	0.26	+1.0
1,552	-		GFF3496	0.26	+0.8
1,552	-		GFF3496	0.26	+2.2
1,552	-		GFF3496	0.26	+0.2
1,662	+		GFF3496	0.32	-0.0
1,707	+		GFF3496	0.34	-0.2
1,707	+		GFF3496	0.34	-0.8
1,708	-		GFF3496	0.34	-1.5
1,708	-		GFF3496	0.34	-1.6
1,708	-		GFF3496	0.34	-0.4
1,836	+		GFF3496	0.41	+0.2
1,837	-		GFF3496	0.41	+2.8
1,837	-		GFF3496	0.41	+0.2
1,861	-		GFF3496	0.42	+2.2
1,861	-		GFF3496	0.42	-0.2
1,893	+		GFF3496	0.44	-0.7
1,935	+		GFF3496	0.46	-0.6
1,936	-		GFF3496	0.46	-0.5
1,984	-		GFF3496	0.48	+1.2
2,007	+		GFF3496	0.50	-0.0