Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF333 and GFF334 overlap by 28 nucleotides GFF334 and GFF335 are separated by 84 nucleotides GFF335 and GFF336 are separated by 14 nucleotides GFF336 and GFF337 overlap by 48 nucleotides
GFF333 - hypothetical protein, at 367,132 to 367,584
GFF333
GFF334 - Transcriptional regulator, AraC family, at 367,557 to 368,390
GFF334
GFF335 - Cytosine deaminase (EC 3.5.4.1), at 368,475 to 369,755
GFF335
GFF336 - no description, at 369,770 to 370,615
GFF336
GFF337 - hypothetical protein, at 370,568 to 371,173
GFF337
Position (kb) 368
369
370 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.548 kb on + strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.549 kb on - strand at 367.552 kb on + strand at 367.552 kb on + strand at 367.552 kb on + strand at 367.552 kb on + strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.553 kb on - strand at 367.582 kb on + strand at 367.582 kb on + strand at 367.645 kb on + strand, within GFF334 at 367.646 kb on - strand, within GFF334 at 367.646 kb on - strand, within GFF334 at 367.843 kb on + strand, within GFF334 at 367.843 kb on + strand, within GFF334 at 367.844 kb on - strand, within GFF334 at 367.844 kb on - strand, within GFF334 at 367.844 kb on - strand, within GFF334 at 367.844 kb on - strand, within GFF334 at 368.251 kb on + strand, within GFF334 at 368.252 kb on - strand, within GFF334 at 368.670 kb on + strand, within GFF335 at 368.671 kb on - strand, within GFF335 at 368.781 kb on + strand, within GFF335 at 368.782 kb on - strand, within GFF335 at 368.782 kb on - strand, within GFF335 at 368.782 kb on - strand, within GFF335 at 368.898 kb on + strand, within GFF335 at 368.898 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.228 kb on + strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.229 kb on - strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.231 kb on + strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.232 kb on - strand, within GFF335 at 369.327 kb on + strand, within GFF335 at 369.327 kb on + strand, within GFF335 at 369.328 kb on - strand, within GFF335 at 369.328 kb on - strand, within GFF335 at 369.328 kb on - strand, within GFF335 at 369.870 kb on - strand, within GFF336 at 369.870 kb on - strand, within GFF336 at 369.902 kb on + strand, within GFF336 at 369.902 kb on + strand, within GFF336 at 369.902 kb on + strand, within GFF336 at 369.902 kb on + strand, within GFF336 at 369.902 kb on + strand, within GFF336 at 369.903 kb on - strand, within GFF336 at 369.903 kb on - strand, within GFF336 at 369.903 kb on - strand, within GFF336 at 369.903 kb on - strand, within GFF336 at 369.965 kb on + strand, within GFF336 at 370.053 kb on - strand, within GFF336 at 370.325 kb on + strand, within GFF336 at 370.325 kb on + strand, within GFF336 at 370.325 kb on + strand, within GFF336 at 370.325 kb on + strand, within GFF336 at 370.325 kb on + strand, within GFF336 at 370.325 kb on + strand, within GFF336 at 370.326 kb on - strand, within GFF336 at 370.326 kb on - strand, within GFF336 at 370.326 kb on - strand, within GFF336 at 370.326 kb on - strand, within GFF336 at 370.326 kb on - strand, within GFF336 at 370.562 kb on + strand at 370.562 kb on + strand at 370.562 kb on + strand at 370.562 kb on + strand at 370.562 kb on + strand at 370.562 kb on + strand at 370.562 kb on + strand at 370.562 kb on + strand at 370.563 kb on - strand at 370.563 kb on - strand at 370.563 kb on - strand at 370.563 kb on - strand at 370.563 kb on - strand at 370.563 kb on - strand at 370.722 kb on + strand, within GFF337 at 370.722 kb on + strand, within GFF337 at 370.723 kb on - strand, within GFF337 at 370.723 kb on - strand, within GFF337 at 370.723 kb on - strand, within GFF337
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 367,548 + +0.2 367,548 + +0.0 367,548 + -1.4 367,548 + +0.0 367,548 + -0.7 367,548 + -0.1 367,548 + -0.7 367,548 + -0.3 367,548 + -0.1 367,548 + +0.3 367,548 + -0.9 367,549 - -1.1 367,549 - -0.2 367,549 - +0.7 367,549 - -0.2 367,549 - +0.5 367,549 - +0.3 367,549 - -0.7 367,549 - +0.3 367,549 - +0.8 367,549 - -1.5 367,549 - +1.3 367,552 + -0.0 367,552 + -0.5 367,552 + +0.8 367,552 + +0.9 367,553 - -0.2 367,553 - -0.4 367,553 - +1.1 367,553 - +0.0 367,553 - -0.0 367,553 - -1.7 367,553 - -0.3 367,553 - +0.3 367,582 + -0.1 367,582 + -1.3 367,645 + GFF334 0.11 -0.7 367,646 - GFF334 0.11 +0.3 367,646 - GFF334 0.11 +1.3 367,843 + GFF334 0.34 -0.2 367,843 + GFF334 0.34 -0.6 367,844 - GFF334 0.34 -0.6 367,844 - GFF334 0.34 -1.0 367,844 - GFF334 0.34 -1.0 367,844 - GFF334 0.34 -1.3 368,251 + GFF334 0.83 -0.5 368,252 - GFF334 0.83 -0.4 368,670 + GFF335 0.15 -0.3 368,671 - GFF335 0.15 +0.5 368,781 + GFF335 0.24 -0.7 368,782 - GFF335 0.24 +1.3 368,782 - GFF335 0.24 -0.7 368,782 - GFF335 0.24 -1.3 368,898 + GFF335 0.33 -1.3 368,898 + GFF335 0.33 -0.0 369,228 + GFF335 0.59 +0.1 369,228 + GFF335 0.59 -0.9 369,228 + GFF335 0.59 +0.7 369,228 + GFF335 0.59 -0.6 369,228 + GFF335 0.59 +0.7 369,228 + GFF335 0.59 +0.4 369,228 + GFF335 0.59 -0.5 369,228 + GFF335 0.59 -1.2 369,228 + GFF335 0.59 -0.4 369,229 - GFF335 0.59 -1.2 369,229 - GFF335 0.59 -1.3 369,229 - GFF335 0.59 +0.1 369,229 - GFF335 0.59 -0.1 369,229 - GFF335 0.59 +0.8 369,229 - GFF335 0.59 -0.4 369,229 - GFF335 0.59 +0.2 369,229 - GFF335 0.59 -0.2 369,229 - GFF335 0.59 +0.3 369,229 - GFF335 0.59 -0.5 369,229 - GFF335 0.59 -0.3 369,229 - GFF335 0.59 -0.1 369,229 - GFF335 0.59 -0.7 369,229 - GFF335 0.59 -0.4 369,231 + GFF335 0.59 +0.1 369,231 + GFF335 0.59 -0.3 369,231 + GFF335 0.59 -0.6 369,231 + GFF335 0.59 -0.5 369,231 + GFF335 0.59 -0.9 369,231 + GFF335 0.59 +0.3 369,231 + GFF335 0.59 +1.3 369,232 - GFF335 0.59 +0.3 369,232 - GFF335 0.59 -0.1 369,232 - GFF335 0.59 -1.5 369,232 - GFF335 0.59 -1.3 369,232 - GFF335 0.59 -0.7 369,232 - GFF335 0.59 +0.0 369,232 - GFF335 0.59 -1.3 369,327 + GFF335 0.67 +0.3 369,327 + GFF335 0.67 -2.4 369,328 - GFF335 0.67 -0.1 369,328 - GFF335 0.67 -0.9 369,328 - GFF335 0.67 -0.3 369,870 - GFF336 0.12 +0.8 369,870 - GFF336 0.12 -0.4 369,902 + GFF336 0.16 -1.2 369,902 + GFF336 0.16 -0.2 369,902 + GFF336 0.16 +1.8 369,902 + GFF336 0.16 -0.6 369,902 + GFF336 0.16 +0.2 369,903 - GFF336 0.16 +0.3 369,903 - GFF336 0.16 +0.3 369,903 - GFF336 0.16 -0.5 369,903 - GFF336 0.16 -0.7 369,965 + GFF336 0.23 +0.3 370,053 - GFF336 0.33 +0.3 370,325 + GFF336 0.66 +1.3 370,325 + GFF336 0.66 -3.8 370,325 + GFF336 0.66 +0.1 370,325 + GFF336 0.66 -0.2 370,325 + GFF336 0.66 -0.2 370,325 + GFF336 0.66 -0.5 370,326 - GFF336 0.66 +0.7 370,326 - GFF336 0.66 -0.3 370,326 - GFF336 0.66 -1.5 370,326 - GFF336 0.66 -0.1 370,326 - GFF336 0.66 +0.1 370,562 + -0.7 370,562 + +1.0 370,562 + -0.3 370,562 + -0.2 370,562 + -1.5 370,562 + +0.4 370,562 + -0.2 370,562 + -0.3 370,563 - +0.2 370,563 - +0.0 370,563 - -0.2 370,563 - +1.1 370,563 - -0.2 370,563 - -2.2 370,722 + GFF337 0.25 -0.2 370,722 + GFF337 0.25 +0.0 370,723 - GFF337 0.26 -1.0 370,723 - GFF337 0.26 +0.5 370,723 - GFF337 0.26 +0.9
Or see this region's nucleotide sequence