Strain Fitness in Variovorax sp. SCN45 around GFF3328

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3326 and GFF3327 overlap by 4 nucleotidesGFF3327 and GFF3328 are separated by 155 nucleotidesGFF3328 and GFF3329 are separated by 85 nucleotides GFF3326 - hypothetical protein, at 152,762 to 153,223 GFF3326 GFF3327 - RidA/YER057c/UK114 superfamily, group 1, at 153,220 to 153,705 GFF3327 GFF3328 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 153,861 to 154,964 GFF3328 GFF3329 - Terpene utilization protein AtuA, at 155,050 to 156,858 GFF3329 Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1at 152.886 kb on + strand, within GFF3326at 152.887 kb on - strand, within GFF3326at 152.887 kb on - strand, within GFF3326at 152.887 kb on - strand, within GFF3326at 153.135 kb on + strand, within GFF3326at 153.136 kb on - strand, within GFF3326at 153.153 kb on - strand, within GFF3326at 153.497 kb on + strand, within GFF3327at 153.497 kb on + strand, within GFF3327at 153.498 kb on - strand, within GFF3327at 153.498 kb on - strand, within GFF3327at 153.773 kb on - strandat 153.886 kb on + strandat 153.907 kb on + strandat 153.907 kb on + strandat 153.908 kb on - strandat 153.908 kb on - strandat 154.134 kb on + strand, within GFF3328at 154.177 kb on + strand, within GFF3328at 154.177 kb on + strand, within GFF3328at 154.177 kb on + strand, within GFF3328at 154.178 kb on - strand, within GFF3328at 154.178 kb on - strand, within GFF3328at 154.178 kb on - strand, within GFF3328at 154.178 kb on - strand, within GFF3328at 154.213 kb on + strand, within GFF3328at 154.213 kb on + strand, within GFF3328at 154.213 kb on + strand, within GFF3328at 154.213 kb on + strand, within GFF3328at 154.213 kb on + strand, within GFF3328at 154.213 kb on + strand, within GFF3328at 154.214 kb on - strand, within GFF3328at 154.214 kb on - strand, within GFF3328at 154.214 kb on - strand, within GFF3328at 154.366 kb on + strand, within GFF3328at 154.417 kb on + strand, within GFF3328at 154.417 kb on + strand, within GFF3328at 154.417 kb on + strand, within GFF3328at 154.418 kb on - strand, within GFF3328at 154.418 kb on - strand, within GFF3328at 154.490 kb on - strand, within GFF3328at 154.490 kb on - strand, within GFF3328at 154.751 kb on - strand, within GFF3328at 154.771 kb on + strand, within GFF3328at 154.771 kb on + strand, within GFF3328at 154.840 kb on + strand, within GFF3328at 154.840 kb on + strand, within GFF3328at 154.841 kb on - strand, within GFF3328at 154.841 kb on - strand, within GFF3328at 154.841 kb on - strand, within GFF3328at 154.843 kb on + strand, within GFF3328at 154.843 kb on + strand, within GFF3328at 154.843 kb on + strand, within GFF3328at 154.843 kb on + strand, within GFF3328at 154.843 kb on + strand, within GFF3328at 154.843 kb on + strand, within GFF3328at 154.843 kb on + strand, within GFF3328at 154.843 kb on + strand, within GFF3328at 154.843 kb on + strand, within GFF3328at 154.843 kb on + strand, within GFF3328at 154.844 kb on - strand, within GFF3328at 154.844 kb on - strand, within GFF3328at 154.844 kb on - strand, within GFF3328at 155.031 kb on - strandat 155.031 kb on - strandat 155.051 kb on + strandat 155.051 kb on + strandat 155.052 kb on - strandat 155.052 kb on - strandat 155.213 kb on + strandat 155.380 kb on + strand, within GFF3329at 155.380 kb on + strand, within GFF3329at 155.446 kb on + strand, within GFF3329at 155.447 kb on - strand, within GFF3329at 155.546 kb on + strand, within GFF3329at 155.903 kb on + strand, within GFF3329at 155.903 kb on + strand, within GFF3329at 155.904 kb on - strand, within GFF3329at 155.904 kb on - strand, within GFF3329at 155.921 kb on + strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329at 155.922 kb on - strand, within GFF3329

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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152,886 + GFF3326 0.27 +0.5
152,887 - GFF3326 0.27 +0.3
152,887 - GFF3326 0.27 -0.2
152,887 - GFF3326 0.27 -0.5
153,135 + GFF3326 0.81 -0.2
153,136 - GFF3326 0.81 -0.9
153,153 - GFF3326 0.85 +0.0
153,497 + GFF3327 0.57 +0.9
153,497 + GFF3327 0.57 -0.7
153,498 - GFF3327 0.57 -0.1
153,498 - GFF3327 0.57 -1.0
153,773 - +1.3
153,886 + -0.1
153,907 + -0.7
153,907 + -0.2
153,908 - +0.2
153,908 - -0.4
154,134 + GFF3328 0.25 +0.9
154,177 + GFF3328 0.29 +0.2
154,177 + GFF3328 0.29 -0.1
154,177 + GFF3328 0.29 -0.8
154,178 - GFF3328 0.29 +0.9
154,178 - GFF3328 0.29 -0.1
154,178 - GFF3328 0.29 +1.3
154,178 - GFF3328 0.29 +0.1
154,213 + GFF3328 0.32 -0.1
154,213 + GFF3328 0.32 -1.5
154,213 + GFF3328 0.32 +0.6
154,213 + GFF3328 0.32 +0.8
154,213 + GFF3328 0.32 -0.4
154,213 + GFF3328 0.32 -0.1
154,214 - GFF3328 0.32 +0.1
154,214 - GFF3328 0.32 +0.2
154,214 - GFF3328 0.32 -0.8
154,366 + GFF3328 0.46 +1.1
154,417 + GFF3328 0.50 -0.5
154,417 + GFF3328 0.50 -0.7
154,417 + GFF3328 0.50 -0.0
154,418 - GFF3328 0.50 +0.3
154,418 - GFF3328 0.50 +0.6
154,490 - GFF3328 0.57 -0.6
154,490 - GFF3328 0.57 -0.8
154,751 - GFF3328 0.81 -1.8
154,771 + GFF3328 0.82 +0.9
154,771 + GFF3328 0.82 -0.0
154,840 + GFF3328 0.89 -0.9
154,840 + GFF3328 0.89 -0.3
154,841 - GFF3328 0.89 +0.9
154,841 - GFF3328 0.89 -0.5
154,841 - GFF3328 0.89 -1.5
154,843 + GFF3328 0.89 +0.3
154,843 + GFF3328 0.89 +0.9
154,843 + GFF3328 0.89 +0.2
154,843 + GFF3328 0.89 -0.2
154,843 + GFF3328 0.89 +0.3
154,843 + GFF3328 0.89 +0.5
154,843 + GFF3328 0.89 +0.1
154,843 + GFF3328 0.89 -0.1
154,843 + GFF3328 0.89 +1.5
154,843 + GFF3328 0.89 -0.1
154,844 - GFF3328 0.89 +0.0
154,844 - GFF3328 0.89 -1.1
154,844 - GFF3328 0.89 -0.2
155,031 - -0.6
155,031 - +0.3
155,051 + -0.9
155,051 + +1.2
155,052 - +0.5
155,052 - +0.3
155,213 + -0.1
155,380 + GFF3329 0.18 +0.5
155,380 + GFF3329 0.18 -0.3
155,446 + GFF3329 0.22 +0.3
155,447 - GFF3329 0.22 -0.6
155,546 + GFF3329 0.27 -1.8
155,903 + GFF3329 0.47 +1.3
155,903 + GFF3329 0.47 -0.2
155,904 - GFF3329 0.47 -0.0
155,904 - GFF3329 0.47 -0.1
155,921 + GFF3329 0.48 -0.3
155,922 - GFF3329 0.48 +0.0
155,922 - GFF3329 0.48 -0.2
155,922 - GFF3329 0.48 +1.4
155,922 - GFF3329 0.48 -0.0
155,922 - GFF3329 0.48 -0.9
155,922 - GFF3329 0.48 +0.0
155,922 - GFF3329 0.48 -0.3

Or see this region's nucleotide sequence