Strain Fitness in Variovorax sp. SCN45 around GFF3199

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
15,241	+		GFF3197	0.14	+0.8
15,241	+		GFF3197	0.14	-0.4
15,241	+		GFF3197	0.14	+0.7
15,241	+		GFF3197	0.14	-0.3
15,241	+		GFF3197	0.14	-0.2
15,241	+		GFF3197	0.14	-0.3
15,241	+		GFF3197	0.14	+0.3
15,241	+		GFF3197	0.14	+1.9
15,241	+		GFF3197	0.14	-1.1
15,241	+		GFF3197	0.14	-0.2
15,241	+		GFF3197	0.14	-0.5
15,241	+		GFF3197	0.14	+0.7
15,241	+		GFF3197	0.14	-1.0
15,241	+		GFF3197	0.14	-0.0
15,241	+		GFF3197	0.14	+0.4
15,242	-		GFF3197	0.14	+0.5
15,242	-		GFF3197	0.14	-0.3
15,242	-		GFF3197	0.14	-0.1
15,242	-		GFF3197	0.14	-1.4
15,242	-		GFF3197	0.14	+1.2
15,242	-		GFF3197	0.14	-0.0
15,242	-		GFF3197	0.14	-0.6
15,242	-		GFF3197	0.14	+1.0
15,242	-		GFF3197	0.14	+0.0
15,355	+		GFF3197	0.38	+2.2
15,356	-		GFF3197	0.39	+0.9
15,445	+		GFF3197	0.58	-0.1
15,869	+		GFF3198	0.36	-0.0
16,161	-				-0.7
16,315	+		GFF3199	0.19	+0.2
16,315	+		GFF3199	0.19	-0.1
16,316	-		GFF3199	0.19	+0.1
16,316	-		GFF3199	0.19	+0.5
16,336	+		GFF3199	0.22	-0.4
16,337	-		GFF3199	0.22	-1.4
16,337	-		GFF3199	0.22	+0.1
16,337	-		GFF3199	0.22	+0.3
16,339	+		GFF3199	0.22	+0.2
16,340	-		GFF3199	0.22	-0.1
16,340	-		GFF3199	0.22	-0.9
16,340	-		GFF3199	0.22	+0.7
16,555	+		GFF3199	0.48	-0.1
16,555	+		GFF3199	0.48	+0.6
16,759	+		GFF3199	0.72	+0.3
16,759	+		GFF3199	0.72	+0.4
16,956	-				+0.3
17,025	-				+0.6
17,025	-				-0.3
17,159	+				-0.7
17,160	-				+0.0
17,160	-				+0.9
17,160	-				-1.9
17,193	+				-0.3
17,193	+				-0.7
17,193	+				+1.9
17,194	-				+0.2
17,194	-				-1.1
17,197	+				-0.7
17,197	+				-0.4
17,197	+				-0.9
17,197	+				-1.8
17,197	+				+0.3
17,197	+				+0.7
17,197	+				+0.7
17,197	+				-0.1
17,198	-				+0.5
17,198	-				-0.3
17,198	-				-0.9
17,198	-				+0.3
17,198	-				-1.7
17,198	-				+0.4
17,198	-				-0.5
17,198	-				-0.5
17,198	-				-2.3
17,201	+				-0.2
17,201	+				-0.0
17,201	+				-1.3
17,201	+				-1.4
17,201	+				-0.6
17,201	+				-0.2
17,201	+				+1.0
17,201	+				-0.4
17,201	+				-0.2
17,202	-				-0.4
17,202	-				-0.3
17,202	-				+0.5
17,202	-				-0.0
17,202	-				+0.5
17,202	-				-0.5
17,202	-				-0.2
17,202	-				-0.3
17,202	-				+0.3
17,210	+				+0.1
17,210	+				+0.7
17,257	+				+0.0
17,257	+				+0.5
17,258	-				-0.4
17,273	-				+2.5
17,273	-				+0.5
17,276	+				+0.1
17,370	+				+0.4
17,370	+				-0.6
17,371	-				-0.7
17,473	+				-0.5
17,474	-				-0.9
17,474	-				-1.8
17,515	+				+0.0
17,515	+				-0.1
17,515	+				+0.9
17,515	+				-0.6
17,515	+				+0.3
17,543	+				+0.2
17,543	+				-0.4
17,543	+				-0.8
17,543	+				-0.7
17,543	+				+0.1
17,544	-				+1.3
17,544	-				+1.9
17,580	-				+1.9
17,687	+				+0.0
17,709	+				+0.1
17,710	-				-0.5
17,742	+				+0.2
17,742	+				+0.6
17,743	-				+0.9
17,743	-				-0.0
17,774	+				+0.7
17,775	-				+0.2
17,775	-				-1.5
17,809	+				+0.2
17,809	+				-0.5
17,810	-				-0.3
17,810	-				+0.5
17,843	+				-1.0
17,843	+				-0.4
17,844	-				+0.2
17,891	+				-0.4
17,892	-				+0.0
17,892	-				+0.8
17,940	-				+0.2
17,940	-				-0.4
17,940	-				-0.3
17,940	-				+0.1
17,945	-				-0.9