Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3152 and GFF3153 overlap by 4 nucleotides GFF3153 and GFF3154 are separated by 188 nucleotides
GFF3152 - hypothetical protein, at 587,719 to 589,104
GFF3152
GFF3153 - Two-component transcriptional response regulator, LuxR family, at 589,101 to 589,757
GFF3153
GFF3154 - no description, at 589,946 to 591,103
GFF3154
Position (kb) 589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 588.358 kb on - strand, within GFF3152 at 588.358 kb on - strand, within GFF3152 at 588.705 kb on - strand, within GFF3152 at 588.705 kb on - strand, within GFF3152 at 588.714 kb on - strand, within GFF3152 at 588.795 kb on - strand, within GFF3152 at 588.795 kb on - strand, within GFF3152 at 589.007 kb on + strand at 589.007 kb on + strand at 589.007 kb on + strand at 589.008 kb on - strand at 589.009 kb on - strand at 589.013 kb on + strand at 589.014 kb on - strand at 589.117 kb on + strand at 589.117 kb on + strand at 589.118 kb on - strand at 589.118 kb on - strand at 589.143 kb on - strand at 589.402 kb on + strand, within GFF3153 at 589.403 kb on - strand, within GFF3153 at 589.523 kb on + strand, within GFF3153 at 589.524 kb on - strand, within GFF3153 at 589.782 kb on + strand at 589.782 kb on + strand at 589.783 kb on - strand at 589.783 kb on - strand at 589.783 kb on - strand at 589.845 kb on + strand at 590.432 kb on + strand, within GFF3154 at 590.433 kb on - strand, within GFF3154 at 590.433 kb on - strand, within GFF3154 at 590.648 kb on + strand, within GFF3154 at 590.648 kb on + strand, within GFF3154 at 590.649 kb on - strand, within GFF3154 at 590.649 kb on - strand, within GFF3154 at 590.649 kb on - strand, within GFF3154 at 590.649 kb on - strand, within GFF3154 at 590.714 kb on + strand, within GFF3154
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 588,358 - GFF3152 0.46 -0.3 588,358 - GFF3152 0.46 +1.7 588,705 - GFF3152 0.71 -0.2 588,705 - GFF3152 0.71 +0.4 588,714 - GFF3152 0.72 -0.9 588,795 - GFF3152 0.78 -1.1 588,795 - GFF3152 0.78 -2.9 589,007 + -1.5 589,007 + -0.4 589,007 + +1.1 589,008 - -0.1 589,009 - -1.5 589,013 + -0.1 589,014 - +1.1 589,117 + +0.5 589,117 + -0.0 589,118 - -1.3 589,118 - -0.8 589,143 - -1.2 589,402 + GFF3153 0.46 -1.7 589,403 - GFF3153 0.46 -0.1 589,523 + GFF3153 0.64 -1.9 589,524 - GFF3153 0.64 -0.3 589,782 + -0.1 589,782 + +0.8 589,783 - -0.6 589,783 - +2.7 589,783 - -0.8 589,845 + -0.2 590,432 + GFF3154 0.42 -0.3 590,433 - GFF3154 0.42 -1.6 590,433 - GFF3154 0.42 -0.6 590,648 + GFF3154 0.61 -1.5 590,648 + GFF3154 0.61 -0.6 590,649 - GFF3154 0.61 +0.8 590,649 - GFF3154 0.61 -1.0 590,649 - GFF3154 0.61 +0.9 590,649 - GFF3154 0.61 +0.2 590,714 + GFF3154 0.66 -0.1
Or see this region's nucleotide sequence