Strain Fitness in Variovorax sp. SCN45 around GFF3106

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3105 and GFF3106 are separated by 34 nucleotidesGFF3106 and GFF3107 are separated by 17 nucleotides GFF3105 - Tas protein, an NADP(H)-dependent aldo-keto reductase, at 532,185 to 533,363 GFF3105 GFF3106 - Hydrolase, alpha/beta fold family, at 533,398 to 534,291 GFF3106 GFF3107 - Oxidoreductase, aldo/keto reductase family, at 534,309 to 535,319 GFF3107 Position (kb) 533 534 535Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 532.456 kb on + strand, within GFF3105at 532.456 kb on + strand, within GFF3105at 532.456 kb on + strand, within GFF3105at 532.513 kb on + strand, within GFF3105at 532.513 kb on + strand, within GFF3105at 532.514 kb on - strand, within GFF3105at 532.514 kb on - strand, within GFF3105at 532.514 kb on - strand, within GFF3105at 532.550 kb on - strand, within GFF3105at 532.550 kb on - strand, within GFF3105at 532.550 kb on - strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.624 kb on + strand, within GFF3105at 532.625 kb on - strand, within GFF3105at 532.625 kb on - strand, within GFF3105at 532.625 kb on - strand, within GFF3105at 532.625 kb on - strand, within GFF3105at 532.625 kb on - strand, within GFF3105at 532.811 kb on - strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.813 kb on + strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.814 kb on - strand, within GFF3105at 532.861 kb on + strand, within GFF3105at 533.062 kb on + strand, within GFF3105at 533.062 kb on + strand, within GFF3105at 533.062 kb on + strand, within GFF3105at 533.062 kb on + strand, within GFF3105at 533.063 kb on - strand, within GFF3105at 533.063 kb on - strand, within GFF3105at 533.089 kb on + strand, within GFF3105at 533.089 kb on + strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.090 kb on - strand, within GFF3105at 533.109 kb on - strand, within GFF3105at 533.258 kb on + strandat 533.259 kb on - strandat 533.259 kb on - strandat 533.294 kb on + strandat 533.294 kb on + strandat 533.348 kb on + strandat 533.348 kb on + strandat 533.349 kb on - strandat 533.349 kb on - strandat 533.365 kb on + strandat 533.365 kb on + strandat 533.365 kb on + strandat 533.365 kb on + strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.366 kb on - strandat 533.419 kb on + strandat 533.419 kb on + strandat 533.420 kb on - strandat 533.420 kb on - strandat 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.599 kb on + strand, within GFF3106at 533.600 kb on - strand, within GFF3106at 533.600 kb on - strand, within GFF3106at 533.600 kb on - strand, within GFF3106at 533.600 kb on - strand, within GFF3106at 533.615 kb on - strand, within GFF3106at 533.647 kb on + strand, within GFF3106at 533.722 kb on + strand, within GFF3106at 533.722 kb on + strand, within GFF3106at 533.722 kb on + strand, within GFF3106at 533.722 kb on + strand, within GFF3106at 533.723 kb on - strand, within GFF3106at 533.723 kb on - strand, within GFF3106at 533.723 kb on - strand, within GFF3106at 533.815 kb on + strand, within GFF3106at 534.076 kb on + strand, within GFF3106at 534.151 kb on + strand, within GFF3106at 534.152 kb on - strand, within GFF3106at 534.152 kb on - strand, within GFF3106at 534.703 kb on + strand, within GFF3107at 534.778 kb on + strand, within GFF3107at 534.807 kb on + strand, within GFF3107at 534.807 kb on + strand, within GFF3107at 534.808 kb on - strand, within GFF3107at 534.808 kb on - strand, within GFF3107at 534.808 kb on - strand, within GFF3107at 534.868 kb on + strand, within GFF3107at 534.868 kb on + strand, within GFF3107at 534.869 kb on - strand, within GFF3107at 534.947 kb on - strand, within GFF3107at 534.985 kb on + strand, within GFF3107at 534.985 kb on + strand, within GFF3107at 534.985 kb on + strand, within GFF3107at 534.985 kb on + strand, within GFF3107at 534.986 kb on - strand, within GFF3107at 535.024 kb on + strand, within GFF3107at 535.025 kb on - strand, within GFF3107at 535.154 kb on - strand, within GFF3107at 535.154 kb on - strand, within GFF3107at 535.154 kb on - strand, within GFF3107at 535.154 kb on - strand, within GFF3107at 535.154 kb on - strand, within GFF3107at 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
remove
532,456 + GFF3105 0.23 -0.6
532,456 + GFF3105 0.23 +1.1
532,456 + GFF3105 0.23 -0.2
532,513 + GFF3105 0.28 -0.0
532,513 + GFF3105 0.28 -1.3
532,514 - GFF3105 0.28 -1.0
532,514 - GFF3105 0.28 +0.5
532,514 - GFF3105 0.28 +0.7
532,550 - GFF3105 0.31 -0.0
532,550 - GFF3105 0.31 -0.3
532,550 - GFF3105 0.31 -0.3
532,624 + GFF3105 0.37 +0.1
532,624 + GFF3105 0.37 +0.0
532,624 + GFF3105 0.37 -0.5
532,624 + GFF3105 0.37 -1.3
532,624 + GFF3105 0.37 -0.1
532,624 + GFF3105 0.37 -1.0
532,625 - GFF3105 0.37 -0.7
532,625 - GFF3105 0.37 -0.5
532,625 - GFF3105 0.37 -1.2
532,625 - GFF3105 0.37 -0.5
532,625 - GFF3105 0.37 -0.0
532,811 - GFF3105 0.53 -0.4
532,813 + GFF3105 0.53 -0.5
532,813 + GFF3105 0.53 +0.0
532,813 + GFF3105 0.53 +0.0
532,813 + GFF3105 0.53 -0.0
532,813 + GFF3105 0.53 +0.1
532,813 + GFF3105 0.53 +0.4
532,813 + GFF3105 0.53 -0.4
532,813 + GFF3105 0.53 -0.9
532,813 + GFF3105 0.53 +0.5
532,813 + GFF3105 0.53 +0.4
532,813 + GFF3105 0.53 -0.4
532,813 + GFF3105 0.53 +0.8
532,813 + GFF3105 0.53 -0.8
532,813 + GFF3105 0.53 +1.9
532,813 + GFF3105 0.53 +0.8
532,813 + GFF3105 0.53 +1.1
532,813 + GFF3105 0.53 -1.4
532,814 - GFF3105 0.53 -0.1
532,814 - GFF3105 0.53 +0.4
532,814 - GFF3105 0.53 -0.3
532,814 - GFF3105 0.53 +0.1
532,814 - GFF3105 0.53 -0.4
532,814 - GFF3105 0.53 +0.5
532,814 - GFF3105 0.53 -0.4
532,814 - GFF3105 0.53 +0.8
532,814 - GFF3105 0.53 -0.4
532,814 - GFF3105 0.53 -0.5
532,814 - GFF3105 0.53 -0.1
532,814 - GFF3105 0.53 -0.6
532,814 - GFF3105 0.53 +0.5
532,814 - GFF3105 0.53 -0.1
532,814 - GFF3105 0.53 +0.2
532,814 - GFF3105 0.53 +0.0
532,814 - GFF3105 0.53 -0.3
532,814 - GFF3105 0.53 -1.3
532,861 + GFF3105 0.57 +0.0
533,062 + GFF3105 0.74 -0.0
533,062 + GFF3105 0.74 -0.0
533,062 + GFF3105 0.74 -0.6
533,062 + GFF3105 0.74 +3.0
533,063 - GFF3105 0.74 -0.8
533,063 - GFF3105 0.74 -0.7
533,089 + GFF3105 0.77 +0.4
533,089 + GFF3105 0.77 -0.3
533,090 - GFF3105 0.77 +0.7
533,090 - GFF3105 0.77 -0.5
533,090 - GFF3105 0.77 +0.8
533,090 - GFF3105 0.77 +0.0
533,090 - GFF3105 0.77 -0.2
533,090 - GFF3105 0.77 -1.0
533,090 - GFF3105 0.77 -0.0
533,090 - GFF3105 0.77 +0.7
533,090 - GFF3105 0.77 -1.0
533,090 - GFF3105 0.77 +0.5
533,090 - GFF3105 0.77 +1.0
533,090 - GFF3105 0.77 -0.0
533,090 - GFF3105 0.77 +0.1
533,090 - GFF3105 0.77 -0.5
533,109 - GFF3105 0.78 -1.0
533,258 + +0.9
533,259 - -1.3
533,259 - -0.5
533,294 + +1.9
533,294 + -1.3
533,348 + +1.0
533,348 + +0.2
533,349 - +0.1
533,349 - +0.5
533,365 + +0.2
533,365 + +0.3
533,365 + -0.4
533,365 + -0.8
533,366 - +0.1
533,366 - +0.8
533,366 - -0.3
533,366 - -0.5
533,366 - -0.0
533,366 - -1.8
533,366 - +1.0
533,366 - +0.2
533,419 + -1.3
533,419 + +0.8
533,420 - -1.2
533,420 - -0.1
533,599 + GFF3106 0.22 +0.5
533,599 + GFF3106 0.22 -0.4
533,599 + GFF3106 0.22 -1.2
533,599 + GFF3106 0.22 -1.0
533,599 + GFF3106 0.22 +0.2
533,599 + GFF3106 0.22 -0.5
533,599 + GFF3106 0.22 +0.1
533,600 - GFF3106 0.23 +0.3
533,600 - GFF3106 0.23 -0.7
533,600 - GFF3106 0.23 -1.1
533,600 - GFF3106 0.23 -0.9
533,615 - GFF3106 0.24 -1.5
533,647 + GFF3106 0.28 -0.3
533,722 + GFF3106 0.36 -0.8
533,722 + GFF3106 0.36 +0.0
533,722 + GFF3106 0.36 -0.9
533,722 + GFF3106 0.36 -0.2
533,723 - GFF3106 0.36 -1.2
533,723 - GFF3106 0.36 -0.2
533,723 - GFF3106 0.36 -0.9
533,815 + GFF3106 0.47 +0.3
534,076 + GFF3106 0.76 +0.8
534,151 + GFF3106 0.84 -0.5
534,152 - GFF3106 0.84 +0.2
534,152 - GFF3106 0.84 -0.1
534,703 + GFF3107 0.39 -0.5
534,778 + GFF3107 0.46 +0.2
534,807 + GFF3107 0.49 -0.1
534,807 + GFF3107 0.49 -1.7
534,808 - GFF3107 0.49 -0.3
534,808 - GFF3107 0.49 -1.5
534,808 - GFF3107 0.49 +0.1
534,868 + GFF3107 0.55 -0.2
534,868 + GFF3107 0.55 -0.3
534,869 - GFF3107 0.55 -1.3
534,947 - GFF3107 0.63 -0.3
534,985 + GFF3107 0.67 -0.1
534,985 + GFF3107 0.67 -0.0
534,985 + GFF3107 0.67 +0.5
534,985 + GFF3107 0.67 -1.9
534,986 - GFF3107 0.67 -1.3
535,024 + GFF3107 0.71 -0.2
535,025 - GFF3107 0.71 -0.8
535,154 - GFF3107 0.84 -0.5
535,154 - GFF3107 0.84 -0.0
535,154 - GFF3107 0.84 +0.8
535,154 - GFF3107 0.84 -0.8
535,154 - GFF3107 0.84 -0.2
535,240 + -0.9
535,240 + -0.3
535,240 + -1.7
535,240 + -0.2
535,240 + -0.9
535,240 + -1.3
535,240 + +0.4
535,240 + -0.7
535,240 + -0.1
535,240 + +0.4
535,240 + -0.3
535,240 + -1.6
535,240 + -0.5
535,241 - -2.0
535,241 - +0.5
535,241 - -0.7
535,241 - +0.3
535,241 - -1.5
535,241 - -0.4
535,241 - -0.2
535,241 - -2.8
535,241 - -1.0
535,241 - -1.2
535,241 - -0.8
535,241 - -0.7
535,241 - -0.4
535,241 - +1.2

Or see this region's nucleotide sequence