Strain Fitness in Variovorax sp. SCN45 around GFF3034

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
466,058	-		GFF3033	0.51	-2.3
466,431	+		GFF3033	0.72	-0.3
466,431	+		GFF3033	0.72	-2.0
466,431	+		GFF3033	0.72	-0.1
467,033	+				-0.0
467,034	-				-0.9
467,034	-				+0.1
467,034	-				-0.1
467,034	-				-0.2
467,229	-		GFF3034	0.81	-1.6
467,789	+		GFF3035	0.19	-0.7
467,789	+		GFF3035	0.19	-0.3
467,789	+		GFF3035	0.19	-1.3
467,789	+		GFF3035	0.19	-1.8
467,789	+		GFF3035	0.19	+0.1
467,789	+		GFF3035	0.19	-0.1
467,789	+		GFF3035	0.19	-0.5
467,790	-		GFF3035	0.19	-0.2
467,790	-		GFF3035	0.19	-0.1
467,790	-		GFF3035	0.19	-0.3
467,790	-		GFF3035	0.19	-1.4
467,790	-		GFF3035	0.19	-0.8
467,790	-		GFF3035	0.19	-0.7
467,790	-		GFF3035	0.19	-2.0
467,862	-		GFF3035	0.22	+0.7
467,963	+		GFF3035	0.27	-1.1
467,964	-		GFF3035	0.27	-0.5
468,122	+		GFF3035	0.34	+0.7
468,122	+		GFF3035	0.34	-1.3
468,123	-		GFF3035	0.34	-0.1
468,251	+		GFF3035	0.40	-1.8
468,263	+		GFF3035	0.40	+0.2