Strain Fitness in Variovorax sp. SCN45 around GFF2982

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2981 and GFF2982 overlap by 4 nucleotidesGFF2982 and GFF2983 are separated by 14 nucleotides GFF2981 - no description, at 411,914 to 412,807 GFF2981 GFF2982 - Histone acetyltransferase HPA2 and related acetyltransferases, at 412,804 to 413,433 GFF2982 GFF2983 - Transcriptional regulator YfeR, LysR family, at 413,448 to 414,401 GFF2983 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1 2at 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.025 kb on + strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.026 kb on - strand, within GFF2981at 412.619 kb on + strand, within GFF2981at 412.619 kb on + strand, within GFF2981at 412.619 kb on + strand, within GFF2981at 412.620 kb on - strand, within GFF2981at 412.620 kb on - strand, within GFF2981at 413.029 kb on + strand, within GFF2982at 413.029 kb on + strand, within GFF2982at 413.029 kb on + strand, within GFF2982at 413.029 kb on + strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.030 kb on - strand, within GFF2982at 413.035 kb on + strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.036 kb on - strand, within GFF2982at 413.071 kb on + strand, within GFF2982at 413.072 kb on - strand, within GFF2982at 413.072 kb on - strand, within GFF2982at 413.093 kb on + strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.094 kb on - strand, within GFF2982at 413.143 kb on + strand, within GFF2982at 413.144 kb on - strand, within GFF2982at 413.144 kb on - strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.155 kb on + strand, within GFF2982at 413.185 kb on + strand, within GFF2982at 413.279 kb on - strand, within GFF2982at 413.320 kb on + strand, within GFF2982at 413.320 kb on + strand, within GFF2982at 413.320 kb on + strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.321 kb on - strand, within GFF2982at 413.572 kb on + strand, within GFF2983at 413.572 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.653 kb on + strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.654 kb on - strand, within GFF2983at 413.701 kb on + strand, within GFF2983at 413.702 kb on - strand, within GFF2983at 413.716 kb on + strand, within GFF2983

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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412,025 + GFF2981 0.12 -0.0
412,025 + GFF2981 0.12 +0.4
412,025 + GFF2981 0.12 -0.5
412,025 + GFF2981 0.12 -1.6
412,025 + GFF2981 0.12 +0.6
412,026 - GFF2981 0.13 -1.3
412,026 - GFF2981 0.13 +0.3
412,026 - GFF2981 0.13 -1.8
412,026 - GFF2981 0.13 +0.4
412,026 - GFF2981 0.13 +0.7
412,026 - GFF2981 0.13 -0.2
412,026 - GFF2981 0.13 -0.2
412,026 - GFF2981 0.13 -0.4
412,619 + GFF2981 0.79 +0.8
412,619 + GFF2981 0.79 -1.0
412,619 + GFF2981 0.79 +0.8
412,620 - GFF2981 0.79 -1.5
412,620 - GFF2981 0.79 -0.5
413,029 + GFF2982 0.36 -0.4
413,029 + GFF2982 0.36 -0.1
413,029 + GFF2982 0.36 -0.4
413,029 + GFF2982 0.36 -0.2
413,030 - GFF2982 0.36 +0.6
413,030 - GFF2982 0.36 -0.9
413,030 - GFF2982 0.36 -2.1
413,030 - GFF2982 0.36 -0.6
413,030 - GFF2982 0.36 -0.3
413,030 - GFF2982 0.36 -0.2
413,030 - GFF2982 0.36 -0.5
413,030 - GFF2982 0.36 -0.4
413,030 - GFF2982 0.36 -0.4
413,035 + GFF2982 0.37 -0.2
413,036 - GFF2982 0.37 +1.6
413,036 - GFF2982 0.37 -0.3
413,036 - GFF2982 0.37 -0.3
413,036 - GFF2982 0.37 -0.6
413,071 + GFF2982 0.42 -0.6
413,072 - GFF2982 0.43 -0.3
413,072 - GFF2982 0.43 -1.4
413,093 + GFF2982 0.46 +1.7
413,094 - GFF2982 0.46 -0.9
413,094 - GFF2982 0.46 -0.3
413,094 - GFF2982 0.46 -0.9
413,094 - GFF2982 0.46 +1.4
413,094 - GFF2982 0.46 -1.5
413,143 + GFF2982 0.54 +0.3
413,144 - GFF2982 0.54 -0.6
413,144 - GFF2982 0.54 -0.4
413,155 + GFF2982 0.56 -0.2
413,155 + GFF2982 0.56 -0.3
413,155 + GFF2982 0.56 -1.3
413,155 + GFF2982 0.56 -0.8
413,185 + GFF2982 0.60 -0.6
413,279 - GFF2982 0.75 -0.9
413,320 + GFF2982 0.82 -0.0
413,320 + GFF2982 0.82 -0.4
413,320 + GFF2982 0.82 -0.1
413,321 - GFF2982 0.82 -0.2
413,321 - GFF2982 0.82 -0.4
413,321 - GFF2982 0.82 -0.2
413,321 - GFF2982 0.82 -0.0
413,572 + GFF2983 0.13 -0.2
413,572 + GFF2983 0.13 -1.1
413,653 + GFF2983 0.21 +0.9
413,653 + GFF2983 0.21 -1.0
413,653 + GFF2983 0.21 -1.0
413,653 + GFF2983 0.21 -0.6
413,653 + GFF2983 0.21 +1.0
413,653 + GFF2983 0.21 +2.0
413,653 + GFF2983 0.21 +0.9
413,654 - GFF2983 0.22 -0.3
413,654 - GFF2983 0.22 +0.1
413,654 - GFF2983 0.22 -1.0
413,654 - GFF2983 0.22 -0.3
413,654 - GFF2983 0.22 -0.4
413,654 - GFF2983 0.22 +0.4
413,654 - GFF2983 0.22 -0.9
413,654 - GFF2983 0.22 -0.3
413,654 - GFF2983 0.22 -0.9
413,701 + GFF2983 0.27 +1.6
413,702 - GFF2983 0.27 -0.8
413,716 + GFF2983 0.28 +0.8

Or see this region's nucleotide sequence