Strain Fitness in Variovorax sp. SCN45 around GFF2616

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
19,614	-				-1.8
19,614	-				-0.3
19,614	-				-0.2
19,622	+				+1.1
19,622	+				-0.5
19,622	+				-1.2
19,622	+				-1.3
19,622	+				+0.3
19,622	+				+0.1
19,622	+				+0.9
19,622	+				-1.5
19,622	+				+0.2
19,622	+				-0.1
19,622	+				-0.7
19,622	+				-0.5
19,623	-				-0.1
19,623	-				+0.4
19,623	-				+0.5
19,623	-				-0.9
19,623	-				-1.8
19,623	-				-0.3
19,623	-				-0.7
19,623	-				+0.3
19,623	-				-1.0
19,623	-				-0.4
19,623	-				-0.7
19,625	+				-0.5
19,625	+				+2.1
19,626	-				-0.6
19,626	-				+0.8
19,641	-				+0.2
19,641	-				-1.0
19,641	-				-0.8
19,641	-				+0.0
19,641	-				+0.5
19,641	-				-0.5
19,641	-				-1.8
19,668	-				-0.4
19,668	-				-0.4
19,668	-				-0.2
19,668	-				-1.0
19,754	+				-1.3
19,754	+				-1.5
19,754	+				+1.1
19,754	+				+0.9
19,754	+				-0.0
19,754	+				-2.4
19,754	+				+0.6
19,754	+				+0.3
19,754	+				-0.7
19,754	+				-0.8
19,754	+				+0.5
19,754	+				+0.0
19,754	+				+0.3
19,754	+				-1.0
19,754	+				-0.8
19,798	+				+0.0
19,798	+				-1.8
19,798	+				-0.4
19,799	-				+1.0
19,805	+				-0.1
19,805	+				+0.0
19,806	-				-0.3
19,806	-				-0.7
19,825	+				+1.5
19,825	+				-0.0
19,825	+				-0.3
19,825	+				-1.3
19,825	+				+0.0
19,825	+				-0.1
19,825	+				-0.8
19,825	+				-0.6
19,825	+				-0.1
19,825	+				+1.2
19,825	+				+0.3
19,826	-				+0.0
19,826	-				+0.9
19,826	-				+0.1
19,884	+				-0.0
19,885	-				-1.5
19,885	-				-1.3
19,885	-				-0.7
19,885	-				-0.6
19,891	+				-0.8
19,891	+				-0.8
19,891	+				+0.0
19,891	+				-0.6
19,891	+				+1.0
19,891	+				-1.7
19,891	+				-0.7
19,891	+				-1.7
19,891	+				-0.7
19,891	+				+1.4
19,891	+				-2.0
19,891	+				-0.5
19,891	+				-0.4
19,891	+				-0.4
19,891	+				+0.2
19,891	+				-1.6
19,891	+				-1.2
19,892	-				-0.2
19,892	-				-0.2
19,892	-				-2.0
19,892	-				-0.9
19,892	-				+1.7
19,892	-				-0.8
19,892	-				-0.5
19,892	-				-0.3
19,906	+				-0.8
19,906	+				-1.0
19,906	+				-0.5
19,907	-				-0.2
19,907	-				+0.8
19,907	-				-0.1
19,907	-				+0.3
19,907	-				+1.5
19,907	-				-0.1
19,907	-				-0.7
19,926	-		GFF2614	0.11	+0.5
19,942	+		GFF2614	0.20	-0.5
19,943	-		GFF2614	0.21	-0.3
20,062	+				-1.0
20,073	+				+0.2
20,073	+				+0.2
20,074	-				-0.1
20,074	-				-1.0
20,074	-				-0.7
20,074	-				+0.6
20,081	+				-0.5
20,082	-				+0.6
20,108	+		GFF2615	0.16	-1.2
20,173	-		GFF2615	0.52	+0.9
20,296	-				+0.1
20,296	-				-0.4
20,411	+				-0.8
20,411	+				-0.5
20,411	+				-1.0
20,443	-				-0.2
20,524	+				+0.0
20,533	+				-1.7
20,593	+		GFF2616	0.13	+0.1
20,594	-		GFF2616	0.13	-1.1
20,594	-		GFF2616	0.13	+0.4
20,722	+		GFF2616	0.39	-0.1
20,729	+		GFF2616	0.41	-0.3
20,729	+		GFF2616	0.41	+1.6
20,730	-		GFF2616	0.41	+0.8
20,730	-		GFF2616	0.41	-0.4
20,731	+		GFF2616	0.41	+0.6
20,735	+		GFF2616	0.42	-0.4
20,943	+		GFF2616	0.85	-0.2
20,944	-		GFF2616	0.85	+0.5
21,006	-				+0.3
21,029	+				-0.2
21,030	-				+0.5
21,030	-				+0.5
21,030	-				-0.5
21,048	+		GFF2617	0.12	-0.8
21,048	+		GFF2617	0.12	-0.8
21,202	+				-0.1
21,202	+				-0.1
21,202	+				-0.9
21,202	+				+0.2
21,202	+				-0.7
21,202	+				-0.9
21,202	+				+0.4
21,202	+				+0.9
21,202	+				+0.0
21,203	-				-2.4
21,203	-				+0.2
21,204	+				-1.8
21,204	+				-1.2
21,204	+				+0.8
21,204	+				+1.5
21,205	-				-0.2
21,205	-				-0.3
21,205	-				-0.1
21,205	-				-1.9
21,205	-				-1.0
21,210	+				-0.6
21,210	+				-1.3
21,210	+				+1.3
21,210	+				+1.2
21,211	-				-0.1
21,211	-				+0.8
21,262	+				-1.3
21,262	+				-2.0
21,262	+				-0.6
21,262	+				-0.5
21,262	+				-0.2
21,262	+				-1.1
21,263	-				+0.1
21,263	-				-2.0
21,263	-				-0.5
21,275	+				+0.5
21,275	+				-0.5
21,275	+				-0.2
21,275	+				+0.4
21,275	+				-0.7
21,276	-				+0.0
21,276	-				-0.0
21,276	-				-0.1
21,276	-				-1.6
21,276	-				+0.8
21,276	-				-1.2
21,276	-				+0.2
21,276	-				-0.2
21,276	-				-0.1
21,276	-				+0.4
21,276	-				-0.1
21,277	+				+0.1
21,278	-				-0.4
21,340	+				+1.5
21,405	+				+0.5
21,405	+				+1.8
21,406	-				-0.1
21,406	-				-1.0
21,426	+				+0.1
21,426	+				-0.7
21,427	-				+0.7
21,461	-				+0.5
21,498	+				-0.1
21,498	+				+0.7
21,498	+				-0.3
21,499	-				+0.2
21,499	-				-1.2
21,499	-				-1.4
21,499	-				+1.5
21,499	-				-0.0
21,501	+				-0.7
21,502	-				-1.0
21,502	-				-1.8
21,502	-				+0.2
21,507	+				+0.5
21,516	+				-0.0
21,517	-				-1.3
21,517	-				+0.4
21,517	-				-0.9
21,517	-				-1.0
21,561	+				-0.0
21,561	+				+0.4
21,606	+				-0.1
21,606	+				-1.3
21,606	+				-0.6
21,606	+				-0.7
21,607	-				-0.3
21,607	-				-1.3
21,607	-				+0.5
21,607	-				-0.5
21,607	-				-0.1
21,607	-				-1.2
21,661	+				+0.2
21,662	-				-0.1
21,662	-				-0.1
21,671	-				-0.7
21,763	+		GFF2618	0.26	-0.5
21,786	+		GFF2618	0.32	-0.0
21,787	-		GFF2618	0.33	-1.7
21,787	-		GFF2618	0.33	-1.1
21,879	+		GFF2618	0.56	-0.9
21,917	+		GFF2618	0.66	-0.8
21,948	-		GFF2618	0.74	+0.3