Strain Fitness in Variovorax sp. SCN45 around GFF2383

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2381 and GFF2382 are separated by 59 nucleotidesGFF2382 and GFF2383 overlap by 1 nucleotidesGFF2383 and GFF2384 are separated by 178 nucleotidesGFF2384 and GFF2385 are separated by 40 nucleotides GFF2381 - Ribonuclease PH (EC 2.7.7.56), at 435,509 to 436,243 GFF2381 GFF2382 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66), at 436,303 to 436,908 GFF2382 GFF2383 - Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW, at 436,908 to 438,170 GFF2383 GFF2384 - no description, at 438,349 to 438,921 GFF2384 GFF2385 - no description, at 438,962 to 439,252 GFF2385 Position (kb) 436 437 438 439Strain fitness (log2 ratio) -2 -1 0 1at 436.049 kb on + strand, within GFF2381at 436.050 kb on - strand, within GFF2381at 436.050 kb on - strand, within GFF2381at 436.254 kb on + strandat 436.254 kb on + strandat 436.255 kb on - strandat 436.255 kb on - strandat 436.255 kb on - strandat 436.255 kb on - strandat 436.255 kb on - strandat 436.255 kb on - strandat 436.302 kb on + strandat 436.303 kb on - strandat 436.303 kb on - strandat 436.455 kb on + strand, within GFF2382at 436.558 kb on + strand, within GFF2382at 436.559 kb on - strand, within GFF2382at 436.562 kb on - strand, within GFF2382at 436.562 kb on - strand, within GFF2382at 436.562 kb on - strand, within GFF2382at 436.562 kb on - strand, within GFF2382at 436.562 kb on - strand, within GFF2382at 436.783 kb on + strand, within GFF2382at 436.783 kb on + strand, within GFF2382at 436.783 kb on + strand, within GFF2382at 436.783 kb on + strand, within GFF2382at 436.783 kb on + strand, within GFF2382at 436.784 kb on - strand, within GFF2382at 437.028 kb on + strandat 437.028 kb on + strandat 437.029 kb on - strandat 437.029 kb on - strandat 437.029 kb on - strandat 437.029 kb on - strandat 437.029 kb on - strandat 437.029 kb on - strandat 437.065 kb on - strand, within GFF2383at 437.136 kb on + strand, within GFF2383at 437.136 kb on + strand, within GFF2383at 437.136 kb on + strand, within GFF2383at 437.136 kb on + strand, within GFF2383at 437.137 kb on - strand, within GFF2383at 437.137 kb on - strand, within GFF2383at 437.137 kb on - strand, within GFF2383at 437.192 kb on + strand, within GFF2383at 437.358 kb on + strand, within GFF2383at 437.514 kb on + strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.515 kb on - strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.598 kb on + strand, within GFF2383at 437.670 kb on + strand, within GFF2383at 437.739 kb on + strand, within GFF2383at 437.779 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.797 kb on - strand, within GFF2383at 437.806 kb on + strand, within GFF2383at 437.807 kb on - strand, within GFF2383at 437.883 kb on + strand, within GFF2383at 437.883 kb on + strand, within GFF2383at 437.883 kb on + strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 437.884 kb on - strand, within GFF2383at 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.295 kb on + strandat 438.296 kb on - strandat 438.296 kb on - strandat 438.296 kb on - strandat 438.296 kb on - strandat 438.301 kb on + strandat 438.301 kb on + strandat 438.301 kb on + strandat 438.302 kb on - strandat 438.302 kb on - strandat 438.302 kb on - strandat 438.302 kb on - strandat 438.302 kb on - strandat 438.461 kb on - strand, within GFF2384at 438.569 kb on + strand, within GFF2384at 438.570 kb on - strand, within GFF2384at 438.570 kb on - strand, within GFF2384at 438.570 kb on - strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.635 kb on + strand, within GFF2384at 438.636 kb on - strand, within GFF2384at 438.636 kb on - strand, within GFF2384at 438.636 kb on - strand, within GFF2384at 438.636 kb on - strand, within GFF2384at 438.636 kb on - strand, within GFF2384at 438.672 kb on + strand, within GFF2384at 438.673 kb on - strand, within GFF2384at 438.818 kb on + strand, within GFF2384at 438.819 kb on - strand, within GFF2384at 438.839 kb on + strand, within GFF2384at 438.845 kb on + strand, within GFF2384at 438.846 kb on - strand, within GFF2384at 438.942 kb on + strandat 438.943 kb on - strandat 438.963 kb on + strandat 438.964 kb on - strandat 439.010 kb on - strand, within GFF2385at 439.010 kb on - strand, within GFF2385at 439.137 kb on - strand, within GFF2385at 439.145 kb on - strand, within GFF2385at 439.145 kb on - strand, within GFF2385at 439.147 kb on - strand, within GFF2385at 439.147 kb on - strand, within GFF2385

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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436,049 + GFF2381 0.73 -0.4
436,050 - GFF2381 0.74 -0.7
436,050 - GFF2381 0.74 -1.2
436,254 + -0.3
436,254 + -0.6
436,255 - -1.6
436,255 - -1.2
436,255 - +0.5
436,255 - -0.2
436,255 - -0.4
436,255 - +0.1
436,302 + -0.4
436,303 - -0.1
436,303 - -1.0
436,455 + GFF2382 0.25 -2.3
436,558 + GFF2382 0.42 -0.1
436,559 - GFF2382 0.42 -0.8
436,562 - GFF2382 0.43 -2.4
436,562 - GFF2382 0.43 -0.0
436,562 - GFF2382 0.43 -0.6
436,562 - GFF2382 0.43 -0.1
436,562 - GFF2382 0.43 -0.2
436,783 + GFF2382 0.79 +0.4
436,783 + GFF2382 0.79 +0.0
436,783 + GFF2382 0.79 -0.0
436,783 + GFF2382 0.79 -0.8
436,783 + GFF2382 0.79 +1.4
436,784 - GFF2382 0.79 -1.7
437,028 + -0.2
437,028 + -1.3
437,029 - +0.7
437,029 - +0.1
437,029 - -1.4
437,029 - +0.0
437,029 - -0.1
437,029 - -0.7
437,065 - GFF2383 0.12 +0.3
437,136 + GFF2383 0.18 -1.5
437,136 + GFF2383 0.18 +1.1
437,136 + GFF2383 0.18 -0.7
437,136 + GFF2383 0.18 -0.2
437,137 - GFF2383 0.18 +0.4
437,137 - GFF2383 0.18 +0.3
437,137 - GFF2383 0.18 -0.1
437,192 + GFF2383 0.22 +0.2
437,358 + GFF2383 0.36 +0.7
437,514 + GFF2383 0.48 +0.6
437,515 - GFF2383 0.48 -0.8
437,515 - GFF2383 0.48 -0.8
437,515 - GFF2383 0.48 +1.7
437,515 - GFF2383 0.48 -0.7
437,515 - GFF2383 0.48 +1.2
437,515 - GFF2383 0.48 +0.2
437,515 - GFF2383 0.48 -0.2
437,515 - GFF2383 0.48 +0.0
437,515 - GFF2383 0.48 +0.5
437,598 + GFF2383 0.55 +0.2
437,598 + GFF2383 0.55 +0.2
437,598 + GFF2383 0.55 +1.2
437,598 + GFF2383 0.55 +0.5
437,670 + GFF2383 0.60 +0.2
437,739 + GFF2383 0.66 -1.1
437,779 - GFF2383 0.69 -0.2
437,797 - GFF2383 0.70 +0.4
437,797 - GFF2383 0.70 +0.1
437,797 - GFF2383 0.70 -0.5
437,797 - GFF2383 0.70 +0.5
437,806 + GFF2383 0.71 +1.7
437,807 - GFF2383 0.71 +0.5
437,883 + GFF2383 0.77 -0.4
437,883 + GFF2383 0.77 +0.2
437,883 + GFF2383 0.77 -0.1
437,884 - GFF2383 0.77 -0.3
437,884 - GFF2383 0.77 -1.0
437,884 - GFF2383 0.77 -0.4
437,884 - GFF2383 0.77 +1.4
437,884 - GFF2383 0.77 -1.7
437,884 - GFF2383 0.77 -0.4
438,295 + -0.6
438,295 + -0.3
438,295 + -0.4
438,295 + -0.4
438,295 + -0.0
438,295 + +1.7
438,295 + -0.6
438,295 + -2.3
438,295 + -0.3
438,295 + -0.7
438,296 - +0.2
438,296 - +0.0
438,296 - -0.3
438,296 - -0.1
438,301 + +0.2
438,301 + +0.7
438,301 + +0.5
438,302 - +0.4
438,302 - -0.4
438,302 - +0.2
438,302 - -0.1
438,302 - +0.6
438,461 - GFF2384 0.20 +0.1
438,569 + GFF2384 0.38 -0.1
438,570 - GFF2384 0.39 +0.1
438,570 - GFF2384 0.39 +0.4
438,570 - GFF2384 0.39 -0.3
438,635 + GFF2384 0.50 -0.2
438,635 + GFF2384 0.50 -2.0
438,635 + GFF2384 0.50 -0.5
438,635 + GFF2384 0.50 +0.0
438,635 + GFF2384 0.50 -0.9
438,635 + GFF2384 0.50 +0.6
438,636 - GFF2384 0.50 -0.4
438,636 - GFF2384 0.50 +0.2
438,636 - GFF2384 0.50 -0.4
438,636 - GFF2384 0.50 -0.8
438,636 - GFF2384 0.50 +0.9
438,672 + GFF2384 0.56 +0.2
438,673 - GFF2384 0.57 +0.2
438,818 + GFF2384 0.82 -1.5
438,819 - GFF2384 0.82 -0.8
438,839 + GFF2384 0.86 -0.4
438,845 + GFF2384 0.87 -0.2
438,846 - GFF2384 0.87 +0.3
438,942 + +0.4
438,943 - -1.3
438,963 + -0.3
438,964 - -0.3
439,010 - GFF2385 0.16 -1.7
439,010 - GFF2385 0.16 +0.3
439,137 - GFF2385 0.60 -0.2
439,145 - GFF2385 0.63 -0.4
439,145 - GFF2385 0.63 -1.3
439,147 - GFF2385 0.64 +1.5
439,147 - GFF2385 0.64 +0.3

Or see this region's nucleotide sequence