Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2337 and GFF2338 are separated by 81 nucleotides GFF2338 and GFF2339 overlap by 10 nucleotides
GFF2337 - hypothetical protein, at 386,471 to 388,066
GFF2337
GFF2338 - Amidase family protein Atu4441, at 388,148 to 389,554
GFF2338
GFF2339 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 389,545 to 391,032
GFF2339
Position (kb) 388
389
390 Strain fitness (log2 ratio) -1
0
1
2 at 387.148 kb on - strand, within GFF2337 at 387.148 kb on - strand, within GFF2337 at 387.148 kb on - strand, within GFF2337 at 387.186 kb on + strand, within GFF2337 at 387.372 kb on - strand, within GFF2337 at 387.814 kb on - strand, within GFF2337 at 387.903 kb on + strand, within GFF2337 at 387.903 kb on + strand, within GFF2337 at 387.903 kb on + strand, within GFF2337 at 387.903 kb on + strand, within GFF2337 at 387.903 kb on + strand, within GFF2337 at 387.903 kb on + strand, within GFF2337 at 387.903 kb on + strand, within GFF2337 at 387.903 kb on + strand, within GFF2337 at 387.903 kb on + strand, within GFF2337 at 387.904 kb on - strand, within GFF2337 at 387.904 kb on - strand, within GFF2337 at 387.904 kb on - strand, within GFF2337 at 387.904 kb on - strand, within GFF2337 at 387.904 kb on - strand, within GFF2337 at 388.077 kb on + strand at 388.437 kb on + strand, within GFF2338 at 388.438 kb on - strand, within GFF2338 at 388.554 kb on + strand, within GFF2338 at 388.554 kb on + strand, within GFF2338 at 388.554 kb on + strand, within GFF2338 at 388.554 kb on + strand, within GFF2338 at 388.555 kb on - strand, within GFF2338 at 388.730 kb on + strand, within GFF2338 at 388.730 kb on + strand, within GFF2338 at 388.730 kb on + strand, within GFF2338 at 388.731 kb on - strand, within GFF2338 at 388.731 kb on - strand, within GFF2338 at 388.731 kb on - strand, within GFF2338 at 388.731 kb on - strand, within GFF2338 at 388.944 kb on + strand, within GFF2338 at 388.944 kb on + strand, within GFF2338 at 388.944 kb on + strand, within GFF2338 at 388.945 kb on - strand, within GFF2338 at 388.945 kb on - strand, within GFF2338 at 388.945 kb on - strand, within GFF2338 at 388.945 kb on - strand, within GFF2338 at 389.176 kb on - strand, within GFF2338 at 389.352 kb on + strand, within GFF2338 at 389.352 kb on + strand, within GFF2338 at 389.353 kb on - strand, within GFF2338 at 389.512 kb on - strand at 389.645 kb on + strand at 389.645 kb on + strand at 389.780 kb on + strand, within GFF2339 at 389.780 kb on + strand, within GFF2339 at 389.781 kb on - strand, within GFF2339 at 389.781 kb on - strand, within GFF2339 at 389.784 kb on - strand, within GFF2339 at 389.798 kb on + strand, within GFF2339 at 389.798 kb on + strand, within GFF2339 at 389.798 kb on + strand, within GFF2339 at 389.798 kb on + strand, within GFF2339 at 389.799 kb on - strand, within GFF2339 at 389.799 kb on - strand, within GFF2339 at 389.799 kb on - strand, within GFF2339 at 389.799 kb on - strand, within GFF2339 at 389.847 kb on - strand, within GFF2339 at 389.847 kb on - strand, within GFF2339 at 389.847 kb on - strand, within GFF2339 at 389.861 kb on + strand, within GFF2339 at 389.964 kb on - strand, within GFF2339 at 389.964 kb on - strand, within GFF2339 at 389.964 kb on - strand, within GFF2339 at 390.098 kb on + strand, within GFF2339 at 390.099 kb on - strand, within GFF2339 at 390.099 kb on - strand, within GFF2339 at 390.099 kb on - strand, within GFF2339 at 390.099 kb on - strand, within GFF2339 at 390.099 kb on - strand, within GFF2339 at 390.099 kb on - strand, within GFF2339 at 390.476 kb on + strand, within GFF2339 at 390.477 kb on - strand, within GFF2339
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 387,148 - GFF2337 0.42 -0.9 387,148 - GFF2337 0.42 -0.3 387,148 - GFF2337 0.42 -1.6 387,186 + GFF2337 0.45 +0.6 387,372 - GFF2337 0.56 -0.3 387,814 - GFF2337 0.84 +0.2 387,903 + GFF2337 0.90 +0.7 387,903 + GFF2337 0.90 +0.9 387,903 + GFF2337 0.90 +0.4 387,903 + GFF2337 0.90 -1.5 387,903 + GFF2337 0.90 -0.3 387,903 + GFF2337 0.90 +0.4 387,903 + GFF2337 0.90 -1.3 387,903 + GFF2337 0.90 -0.1 387,903 + GFF2337 0.90 +0.2 387,904 - GFF2337 0.90 -0.3 387,904 - GFF2337 0.90 +0.9 387,904 - GFF2337 0.90 -0.1 387,904 - GFF2337 0.90 +0.3 387,904 - GFF2337 0.90 +2.1 388,077 + -1.5 388,437 + GFF2338 0.21 +1.4 388,438 - GFF2338 0.21 -0.6 388,554 + GFF2338 0.29 +0.2 388,554 + GFF2338 0.29 -0.3 388,554 + GFF2338 0.29 -0.1 388,554 + GFF2338 0.29 -0.3 388,555 - GFF2338 0.29 +0.3 388,730 + GFF2338 0.41 -0.3 388,730 + GFF2338 0.41 +1.6 388,730 + GFF2338 0.41 -0.2 388,731 - GFF2338 0.41 -0.1 388,731 - GFF2338 0.41 -0.8 388,731 - GFF2338 0.41 -0.1 388,731 - GFF2338 0.41 +0.3 388,944 + GFF2338 0.57 +0.7 388,944 + GFF2338 0.57 +0.5 388,944 + GFF2338 0.57 +1.0 388,945 - GFF2338 0.57 -0.4 388,945 - GFF2338 0.57 -0.7 388,945 - GFF2338 0.57 +0.0 388,945 - GFF2338 0.57 +0.9 389,176 - GFF2338 0.73 -1.7 389,352 + GFF2338 0.86 -1.4 389,352 + GFF2338 0.86 +1.3 389,353 - GFF2338 0.86 -0.1 389,512 - -0.3 389,645 + +0.4 389,645 + +0.9 389,780 + GFF2339 0.16 +0.3 389,780 + GFF2339 0.16 +0.4 389,781 - GFF2339 0.16 -1.0 389,781 - GFF2339 0.16 +0.7 389,784 - GFF2339 0.16 -1.0 389,798 + GFF2339 0.17 -0.1 389,798 + GFF2339 0.17 -0.8 389,798 + GFF2339 0.17 +0.2 389,798 + GFF2339 0.17 -0.3 389,799 - GFF2339 0.17 -1.3 389,799 - GFF2339 0.17 -0.2 389,799 - GFF2339 0.17 -0.6 389,799 - GFF2339 0.17 -0.7 389,847 - GFF2339 0.20 -0.6 389,847 - GFF2339 0.20 -0.5 389,847 - GFF2339 0.20 +0.2 389,861 + GFF2339 0.21 -0.4 389,964 - GFF2339 0.28 +0.5 389,964 - GFF2339 0.28 -1.4 389,964 - GFF2339 0.28 -1.0 390,098 + GFF2339 0.37 +0.3 390,099 - GFF2339 0.37 -0.0 390,099 - GFF2339 0.37 +0.9 390,099 - GFF2339 0.37 -0.5 390,099 - GFF2339 0.37 -0.5 390,099 - GFF2339 0.37 -0.5 390,099 - GFF2339 0.37 -1.3 390,476 + GFF2339 0.63 -1.7 390,477 - GFF2339 0.63 -1.1
Or see this region's nucleotide sequence