Strain Fitness in Variovorax sp. SCN45 around GFF2230

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
291,508	+		GFF2229	0.44	+0.2
291,577	+		GFF2229	0.53	-0.2
291,578	-		GFF2229	0.53	-0.3
291,688	+		GFF2229	0.67	-0.2
291,689	-		GFF2229	0.67	-1.7
291,689	-		GFF2229	0.67	+0.6
291,689	-		GFF2229	0.67	-0.6
291,898	+				+1.8
291,898	+				-1.4
291,898	+				-0.3
291,898	+				-0.4
291,898	+				-0.5
291,898	+				-0.2
291,898	+				-0.8
291,898	+				+0.7
291,898	+				+0.1
291,898	+				-0.8
291,898	+				-0.3
291,899	-				+0.5
291,899	-				-0.5
291,899	-				-0.3
291,899	-				-0.0
291,899	-				-0.3
291,899	-				-0.3
291,899	-				+0.8
292,460	-		GFF2230	0.54	+0.4
292,592	-		GFF2230	0.72	-0.7
292,653	+		GFF2230	0.81	+0.2
292,794	+				+0.5
292,794	+				+1.4
292,794	+				+0.2
292,795	-				-0.2
292,987	-		GFF2231	0.32	+0.2
292,987	-		GFF2231	0.32	+0.5
292,987	-		GFF2231	0.32	-0.1
292,987	-		GFF2231	0.32	+0.7
293,445	+				-0.0
293,445	+				+1.2
293,445	+				+1.2
293,446	-				-0.1
293,515	+				-0.5