Strain Fitness in Variovorax sp. SCN45 around GFF2076

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2075 and GFF2076 are separated by 24 nucleotidesGFF2076 and GFF2077 overlap by 4 nucleotides GFF2075 - BUG/TctC family periplasmic protein, at 121,166 to 122,161 GFF2075 GFF2076 - Alkyl sulfatase and related hydrolases, MBL-fold metallo-hydrolase superfamily, at 122,186 to 123,457 GFF2076 GFF2077 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 123,454 to 124,794 GFF2077 Position (kb) 122 123 124Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 121.395 kb on + strand, within GFF2075at 121.395 kb on + strand, within GFF2075at 121.395 kb on + strand, within GFF2075at 121.395 kb on + strand, within GFF2075at 121.395 kb on + strand, within GFF2075at 121.396 kb on - strand, within GFF2075at 121.396 kb on - strand, within GFF2075at 121.396 kb on - strand, within GFF2075at 121.396 kb on - strand, within GFF2075at 121.587 kb on + strand, within GFF2075at 121.587 kb on + strand, within GFF2075at 121.588 kb on - strand, within GFF2075at 121.674 kb on + strand, within GFF2075at 121.674 kb on + strand, within GFF2075at 121.674 kb on + strand, within GFF2075at 121.674 kb on + strand, within GFF2075at 121.674 kb on + strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.675 kb on - strand, within GFF2075at 121.704 kb on + strand, within GFF2075at 121.827 kb on + strand, within GFF2075at 121.828 kb on - strand, within GFF2075at 121.828 kb on - strand, within GFF2075at 121.860 kb on + strand, within GFF2075at 121.860 kb on + strand, within GFF2075at 121.860 kb on + strand, within GFF2075at 121.860 kb on + strand, within GFF2075at 121.860 kb on + strand, within GFF2075at 122.061 kb on + strand, within GFF2075at 122.061 kb on + strand, within GFF2075at 122.062 kb on - strandat 122.062 kb on - strandat 122.244 kb on + strandat 122.245 kb on - strandat 122.263 kb on - strandat 122.263 kb on - strandat 122.263 kb on - strandat 122.263 kb on - strandat 122.263 kb on - strandat 122.263 kb on - strandat 122.532 kb on + strand, within GFF2076at 122.532 kb on + strand, within GFF2076at 122.532 kb on + strand, within GFF2076at 122.532 kb on + strand, within GFF2076at 122.533 kb on - strand, within GFF2076at 122.533 kb on - strand, within GFF2076at 122.533 kb on - strand, within GFF2076at 122.550 kb on + strand, within GFF2076at 122.550 kb on + strand, within GFF2076at 122.550 kb on + strand, within GFF2076at 122.565 kb on + strand, within GFF2076at 122.566 kb on - strand, within GFF2076at 122.971 kb on + strand, within GFF2076at 122.972 kb on + strand, within GFF2076at 122.973 kb on - strand, within GFF2076at 122.973 kb on - strand, within GFF2076at 122.973 kb on - strand, within GFF2076at 123.198 kb on + strand, within GFF2076at 123.198 kb on + strand, within GFF2076at 123.198 kb on + strand, within GFF2076at 123.199 kb on - strand, within GFF2076at 123.199 kb on - strand, within GFF2076at 123.199 kb on - strand, within GFF2076at 123.219 kb on + strand, within GFF2076at 123.220 kb on - strand, within GFF2076at 123.220 kb on - strand, within GFF2076at 123.220 kb on - strand, within GFF2076at 123.220 kb on - strand, within GFF2076at 123.220 kb on - strand, within GFF2076at 123.527 kb on + strandat 123.527 kb on + strandat 123.545 kb on + strandat 123.545 kb on + strandat 123.547 kb on + strandat 123.617 kb on + strand, within GFF2077at 123.617 kb on + strand, within GFF2077at 123.617 kb on + strand, within GFF2077at 123.617 kb on + strand, within GFF2077at 123.617 kb on + strand, within GFF2077at 123.617 kb on + strand, within GFF2077at 123.618 kb on - strand, within GFF2077at 123.677 kb on + strand, within GFF2077at 123.677 kb on + strand, within GFF2077at 123.707 kb on + strand, within GFF2077at 123.707 kb on + strand, within GFF2077at 123.707 kb on + strand, within GFF2077at 123.707 kb on + strand, within GFF2077at 123.707 kb on + strand, within GFF2077at 123.707 kb on + strand, within GFF2077at 123.708 kb on - strand, within GFF2077at 123.708 kb on - strand, within GFF2077at 123.722 kb on + strand, within GFF2077at 123.722 kb on + strand, within GFF2077at 123.722 kb on + strand, within GFF2077at 123.722 kb on + strand, within GFF2077at 123.722 kb on + strand, within GFF2077at 123.723 kb on - strand, within GFF2077at 123.723 kb on - strand, within GFF2077at 123.723 kb on - strand, within GFF2077at 123.723 kb on - strand, within GFF2077at 123.723 kb on - strand, within GFF2077at 123.723 kb on - strand, within GFF2077at 123.723 kb on - strand, within GFF2077at 123.785 kb on + strand, within GFF2077at 123.785 kb on + strand, within GFF2077at 123.785 kb on + strand, within GFF2077at 123.785 kb on + strand, within GFF2077at 123.786 kb on - strand, within GFF2077at 123.872 kb on + strand, within GFF2077at 123.872 kb on + strand, within GFF2077at 123.873 kb on - strand, within GFF2077at 123.873 kb on - strand, within GFF2077

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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121,395 + GFF2075 0.23 +0.2
121,395 + GFF2075 0.23 -1.6
121,395 + GFF2075 0.23 -0.8
121,395 + GFF2075 0.23 -0.1
121,395 + GFF2075 0.23 -0.6
121,396 - GFF2075 0.23 -0.0
121,396 - GFF2075 0.23 +0.2
121,396 - GFF2075 0.23 +0.5
121,396 - GFF2075 0.23 -1.5
121,587 + GFF2075 0.42 -0.5
121,587 + GFF2075 0.42 -0.0
121,588 - GFF2075 0.42 +0.3
121,674 + GFF2075 0.51 +0.1
121,674 + GFF2075 0.51 -0.4
121,674 + GFF2075 0.51 -0.0
121,674 + GFF2075 0.51 -0.2
121,674 + GFF2075 0.51 +0.0
121,675 - GFF2075 0.51 -0.2
121,675 - GFF2075 0.51 -0.0
121,675 - GFF2075 0.51 +0.4
121,675 - GFF2075 0.51 -1.4
121,675 - GFF2075 0.51 +0.1
121,675 - GFF2075 0.51 -0.4
121,704 + GFF2075 0.54 +0.4
121,827 + GFF2075 0.66 +0.0
121,828 - GFF2075 0.66 +0.1
121,828 - GFF2075 0.66 -0.4
121,860 + GFF2075 0.70 +1.8
121,860 + GFF2075 0.70 -2.9
121,860 + GFF2075 0.70 -0.4
121,860 + GFF2075 0.70 -2.2
121,860 + GFF2075 0.70 -0.8
122,061 + GFF2075 0.90 -0.0
122,061 + GFF2075 0.90 -0.2
122,062 - -1.1
122,062 - -0.2
122,244 + -0.0
122,245 - +0.2
122,263 - -0.1
122,263 - -2.0
122,263 - -0.3
122,263 - -0.5
122,263 - -0.3
122,263 - -0.1
122,532 + GFF2076 0.27 -2.0
122,532 + GFF2076 0.27 -1.5
122,532 + GFF2076 0.27 -0.4
122,532 + GFF2076 0.27 -0.5
122,533 - GFF2076 0.27 -1.9
122,533 - GFF2076 0.27 -0.3
122,533 - GFF2076 0.27 -1.5
122,550 + GFF2076 0.29 +0.4
122,550 + GFF2076 0.29 -0.4
122,550 + GFF2076 0.29 +0.2
122,565 + GFF2076 0.30 +0.3
122,566 - GFF2076 0.30 +1.8
122,971 + GFF2076 0.62 -0.4
122,972 + GFF2076 0.62 +0.9
122,973 - GFF2076 0.62 -0.8
122,973 - GFF2076 0.62 +1.2
122,973 - GFF2076 0.62 -0.8
123,198 + GFF2076 0.80 +1.8
123,198 + GFF2076 0.80 -0.8
123,198 + GFF2076 0.80 +0.4
123,199 - GFF2076 0.80 -0.3
123,199 - GFF2076 0.80 -1.2
123,199 - GFF2076 0.80 -0.0
123,219 + GFF2076 0.81 -1.0
123,220 - GFF2076 0.81 -1.2
123,220 - GFF2076 0.81 +0.3
123,220 - GFF2076 0.81 -1.2
123,220 - GFF2076 0.81 -0.2
123,220 - GFF2076 0.81 -0.7
123,527 + -2.6
123,527 + -1.4
123,545 + +0.1
123,545 + -0.6
123,547 + +0.3
123,617 + GFF2077 0.12 +1.2
123,617 + GFF2077 0.12 +0.4
123,617 + GFF2077 0.12 -0.7
123,617 + GFF2077 0.12 +1.5
123,617 + GFF2077 0.12 -0.2
123,617 + GFF2077 0.12 -2.1
123,618 - GFF2077 0.12 -0.6
123,677 + GFF2077 0.17 -0.3
123,677 + GFF2077 0.17 +0.2
123,707 + GFF2077 0.19 +0.4
123,707 + GFF2077 0.19 -0.2
123,707 + GFF2077 0.19 -0.9
123,707 + GFF2077 0.19 -0.2
123,707 + GFF2077 0.19 -0.6
123,707 + GFF2077 0.19 +0.6
123,708 - GFF2077 0.19 +0.7
123,708 - GFF2077 0.19 +0.4
123,722 + GFF2077 0.20 -0.8
123,722 + GFF2077 0.20 +0.5
123,722 + GFF2077 0.20 +0.8
123,722 + GFF2077 0.20 -0.2
123,722 + GFF2077 0.20 +0.9
123,723 - GFF2077 0.20 +0.0
123,723 - GFF2077 0.20 +0.4
123,723 - GFF2077 0.20 -0.6
123,723 - GFF2077 0.20 +2.0
123,723 - GFF2077 0.20 -0.2
123,723 - GFF2077 0.20 -0.6
123,723 - GFF2077 0.20 -0.4
123,785 + GFF2077 0.25 -0.5
123,785 + GFF2077 0.25 -0.8
123,785 + GFF2077 0.25 -0.7
123,785 + GFF2077 0.25 +1.2
123,786 - GFF2077 0.25 -1.0
123,872 + GFF2077 0.31 +0.2
123,872 + GFF2077 0.31 +0.4
123,873 - GFF2077 0.31 -1.0
123,873 - GFF2077 0.31 +1.0

Or see this region's nucleotide sequence