Strain Fitness in Variovorax sp. SCN45 around GFF2067

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
115,960	+		GFF2067	0.50	-0.1
115,960	+		GFF2067	0.50	-1.6
115,960	+		GFF2067	0.50	+0.1
115,960	+		GFF2067	0.50	-1.1
115,960	+		GFF2067	0.50	-0.7
115,961	-		GFF2067	0.50	-1.1
115,961	-		GFF2067	0.50	-0.4
115,961	-		GFF2067	0.50	-0.5
115,961	-		GFF2067	0.50	-0.3
115,961	-		GFF2067	0.50	+0.4
115,961	-		GFF2067	0.50	+0.3
115,961	-		GFF2067	0.50	-0.5
115,961	-		GFF2067	0.50	-0.6
115,961	-		GFF2067	0.50	+1.4
115,961	-		GFF2067	0.50	-1.0
115,961	-		GFF2067	0.50	-0.7
115,961	-		GFF2067	0.50	-1.0
115,961	-		GFF2067	0.50	-0.8
115,969	+		GFF2067	0.51	-0.5
115,969	+		GFF2067	0.51	-0.4
115,969	+		GFF2067	0.51	-0.9
115,969	+		GFF2067	0.51	-0.4
115,970	-		GFF2067	0.51	+0.9
115,970	-		GFF2067	0.51	-0.2
115,970	-		GFF2067	0.51	+1.6
115,970	-		GFF2067	0.51	+0.7
116,093	-		GFF2067	0.71	+0.2
116,093	-		GFF2067	0.71	+0.2
116,093	-		GFF2067	0.71	-0.6
116,093	-		GFF2067	0.71	+0.1
116,776	+				-0.7
116,776	+				-0.6
116,776	+				-0.4
116,777	-				+0.4
116,777	-				-0.4
116,777	-				-0.6
116,780	-				+0.0
116,793	+				-0.0
116,793	+				+0.0
116,794	-				-1.9
116,794	-				-0.5
116,794	-				-0.2
116,794	-				-0.1
116,797	+				-0.6
116,797	+				-0.0
116,797	+				-0.5
116,797	+				-0.7
116,797	+				-0.6
116,798	-				-0.7
116,798	-				-0.5
116,798	-				+0.1
116,798	-				+0.7
116,837	+				-0.3
116,837	+				-0.2
116,837	+				+0.2
116,837	+				-0.0
116,837	+				-0.4
116,837	+				+1.9
116,837	+				-0.4
116,837	+				-0.1
116,837	+				+1.5
116,837	+				+0.9
116,837	+				+0.4
116,837	+				+2.2
116,837	+				-0.2
116,838	-				+0.2
116,838	-				+0.3
116,838	-				+1.1
116,838	-				-1.2
116,838	-				-0.2
116,838	-				+0.1
116,838	-				-0.8
116,838	-				-0.4
116,838	-				-0.0
116,838	-				+0.0
116,838	-				-2.3
116,840	+				-0.6
116,841	-				+0.4
116,967	+				-0.3
116,968	+				-1.0
116,968	+				+0.0
116,968	+				-0.3
116,968	+				-1.2
116,968	+				-0.7
116,969	-				+0.3
116,969	-				+0.6
116,969	-				-0.2
116,969	-				-0.0
116,969	-				-0.3
116,969	-				-3.1
117,112	+		GFF2069	0.25	+0.0
117,112	+		GFF2069	0.25	-0.4
117,112	+		GFF2069	0.25	-0.1
117,112	+		GFF2069	0.25	-1.1
117,112	+		GFF2069	0.25	-0.2
117,112	+		GFF2069	0.25	+0.2
117,112	+		GFF2069	0.25	-0.2
117,112	+		GFF2069	0.25	+1.0
117,112	+		GFF2069	0.25	+1.0
117,112	+		GFF2069	0.25	-0.8
117,113	-		GFF2069	0.25	-0.2
117,113	-		GFF2069	0.25	+0.9
117,113	-		GFF2069	0.25	-0.4