Strain Fitness in Variovorax sp. SCN45 around GFF1967

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
9,132	+		GFF1966	0.58	-1.1
9,133	-		GFF1966	0.58	-1.2
9,133	-		GFF1966	0.58	-1.4
9,133	-		GFF1966	0.58	-0.2
9,133	-		GFF1966	0.58	-1.2
9,189	+		GFF1966	0.61	+0.2
9,189	+		GFF1966	0.61	-1.0
9,189	+		GFF1966	0.61	+1.8
9,189	+		GFF1966	0.61	-0.2
9,189	+		GFF1966	0.61	-0.9
9,189	+		GFF1966	0.61	-1.2
9,190	-		GFF1966	0.61	+1.2
9,190	-		GFF1966	0.61	-2.6
9,190	-		GFF1966	0.61	-0.8
9,190	-		GFF1966	0.61	-0.6
9,190	-		GFF1966	0.61	-0.1
9,234	+		GFF1966	0.64	-1.3
9,234	+		GFF1966	0.64	-1.8
9,234	+		GFF1966	0.64	-0.5
9,234	+		GFF1966	0.64	-1.2
9,234	+		GFF1966	0.64	-0.5
9,241	-		GFF1966	0.64	-1.2
9,241	-		GFF1966	0.64	+0.0
9,400	-		GFF1966	0.75	+0.1
9,693	+				-0.5
9,694	-				-0.6
9,694	-				+0.0
10,171	+		GFF1967	0.27	-0.5
10,171	+		GFF1967	0.27	-0.3
10,171	+		GFF1967	0.27	-0.0
10,171	+		GFF1967	0.27	-0.3
10,171	+		GFF1967	0.27	+1.3
10,172	-		GFF1967	0.27	+0.5
10,172	-		GFF1967	0.27	-0.8
10,690	+		GFF1967	0.64	+1.2
10,691	-		GFF1967	0.64	-0.8
10,691	-		GFF1967	0.64	-0.8
10,753	+		GFF1967	0.69	+0.2
10,873	+		GFF1967	0.78	-1.0
10,873	+		GFF1967	0.78	+1.4
10,873	+		GFF1967	0.78	+0.7
10,873	+		GFF1967	0.78	+0.2
10,874	-		GFF1967	0.78	-1.3
10,874	-		GFF1967	0.78	+0.8
10,924	+		GFF1967	0.81	-0.7
10,924	+		GFF1967	0.81	-0.5
10,924	+		GFF1967	0.81	+0.8
10,924	+		GFF1967	0.81	-0.5
10,925	-		GFF1967	0.81	+0.5
10,925	-		GFF1967	0.81	-1.4
10,925	-		GFF1967	0.81	+0.3
11,346	+		GFF1968	0.19	+1.2
11,448	+		GFF1968	0.32	+1.4
11,448	+		GFF1968	0.32	-0.8
11,448	+		GFF1968	0.32	-0.4
11,448	+		GFF1968	0.32	+1.1
11,448	+		GFF1968	0.32	-0.4
11,449	-		GFF1968	0.32	-0.1
11,517	+		GFF1968	0.41	-0.6
11,517	+		GFF1968	0.41	-0.5
11,518	-		GFF1968	0.41	+0.2
11,518	-		GFF1968	0.41	-0.1
11,853	+		GFF1968	0.82	-1.0
11,853	+		GFF1968	0.82	-0.5
11,853	+		GFF1968	0.82	-0.8
11,853	+		GFF1968	0.82	+0.5
11,871	+		GFF1968	0.85	-0.3
11,871	+		GFF1968	0.85	-0.8
11,944	-				+0.4
12,102	-		GFF1969	0.13	-0.7
12,130	+		GFF1969	0.16	-0.6