Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1608 and GFF1609 are separated by 21 nucleotides GFF1609 and GFF1610 are separated by 13 nucleotides
GFF1608 - Aminotransferase, class III, at 206,868 to 208,232
GFF1608
GFF1609 - 2-haloalkanoic acid dehalogenase (EC 3.8.1.2), at 208,254 to 208,979
GFF1609
GFF1610 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 208,993 to 210,459
GFF1610
Position (kb) 208
209 Strain fitness (log2 ratio) -2
-1
0
1
2 at 207.264 kb on + strand, within GFF1608 at 207.267 kb on + strand, within GFF1608 at 207.267 kb on + strand, within GFF1608 at 207.268 kb on - strand, within GFF1608 at 207.268 kb on - strand, within GFF1608 at 207.268 kb on - strand, within GFF1608 at 207.550 kb on + strand, within GFF1608 at 207.786 kb on + strand, within GFF1608 at 207.786 kb on + strand, within GFF1608 at 207.787 kb on - strand, within GFF1608 at 207.787 kb on - strand, within GFF1608 at 207.843 kb on + strand, within GFF1608 at 207.844 kb on - strand, within GFF1608 at 207.894 kb on + strand, within GFF1608 at 207.894 kb on + strand, within GFF1608 at 207.895 kb on - strand, within GFF1608 at 207.895 kb on - strand, within GFF1608 at 207.939 kb on + strand, within GFF1608 at 208.165 kb on - strand at 208.165 kb on - strand at 208.294 kb on - strand at 208.326 kb on + strand at 208.327 kb on - strand, within GFF1609 at 208.327 kb on - strand, within GFF1609 at 208.395 kb on + strand, within GFF1609 at 208.395 kb on + strand, within GFF1609 at 208.395 kb on + strand, within GFF1609 at 208.395 kb on + strand, within GFF1609 at 208.396 kb on - strand, within GFF1609 at 208.396 kb on - strand, within GFF1609 at 208.396 kb on - strand, within GFF1609 at 208.396 kb on - strand, within GFF1609 at 208.396 kb on - strand, within GFF1609 at 208.468 kb on - strand, within GFF1609 at 208.581 kb on + strand, within GFF1609 at 208.581 kb on + strand, within GFF1609 at 208.596 kb on + strand, within GFF1609 at 208.596 kb on + strand, within GFF1609 at 208.597 kb on - strand, within GFF1609 at 208.597 kb on - strand, within GFF1609 at 208.597 kb on - strand, within GFF1609 at 208.681 kb on - strand, within GFF1609 at 208.704 kb on + strand, within GFF1609 at 208.704 kb on + strand, within GFF1609 at 208.705 kb on - strand, within GFF1609 at 208.732 kb on - strand, within GFF1609 at 209.038 kb on + strand at 209.038 kb on + strand at 209.039 kb on - strand at 209.039 kb on - strand at 209.558 kb on - strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.884 kb on + strand, within GFF1610 at 209.885 kb on - strand, within GFF1610 at 209.885 kb on - strand, within GFF1610 at 209.885 kb on - strand, within GFF1610 at 209.903 kb on - strand, within GFF1610 at 209.903 kb on - strand, within GFF1610 at 209.903 kb on - strand, within GFF1610 at 209.903 kb on - strand, within GFF1610
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL remove 207,264 + GFF1608 0.29 -0.7 207,267 + GFF1608 0.29 -2.3 207,267 + GFF1608 0.29 -0.1 207,268 - GFF1608 0.29 -0.4 207,268 - GFF1608 0.29 +0.4 207,268 - GFF1608 0.29 +0.1 207,550 + GFF1608 0.50 -0.2 207,786 + GFF1608 0.67 +0.5 207,786 + GFF1608 0.67 -0.5 207,787 - GFF1608 0.67 -2.0 207,787 - GFF1608 0.67 +0.2 207,843 + GFF1608 0.71 -1.0 207,844 - GFF1608 0.72 +0.2 207,894 + GFF1608 0.75 +0.6 207,894 + GFF1608 0.75 -1.0 207,895 - GFF1608 0.75 +0.0 207,895 - GFF1608 0.75 -1.4 207,939 + GFF1608 0.78 -0.5 208,165 - -0.3 208,165 - -0.0 208,294 - +0.3 208,326 + +1.4 208,327 - GFF1609 0.10 -1.3 208,327 - GFF1609 0.10 -0.2 208,395 + GFF1609 0.19 -0.4 208,395 + GFF1609 0.19 +2.7 208,395 + GFF1609 0.19 -0.9 208,395 + GFF1609 0.19 +0.4 208,396 - GFF1609 0.20 -0.1 208,396 - GFF1609 0.20 +0.2 208,396 - GFF1609 0.20 -0.6 208,396 - GFF1609 0.20 +0.4 208,396 - GFF1609 0.20 +0.1 208,468 - GFF1609 0.29 -0.4 208,581 + GFF1609 0.45 -0.9 208,581 + GFF1609 0.45 -1.1 208,596 + GFF1609 0.47 +0.1 208,596 + GFF1609 0.47 +0.0 208,597 - GFF1609 0.47 +1.1 208,597 - GFF1609 0.47 +0.2 208,597 - GFF1609 0.47 -0.6 208,681 - GFF1609 0.59 -0.3 208,704 + GFF1609 0.62 +0.1 208,704 + GFF1609 0.62 -1.0 208,705 - GFF1609 0.62 -0.3 208,732 - GFF1609 0.66 -0.2 209,038 + -0.3 209,038 + -0.5 209,039 - -0.4 209,039 - -0.3 209,558 - GFF1610 0.39 -0.0 209,884 + GFF1610 0.61 -0.4 209,884 + GFF1610 0.61 -0.2 209,884 + GFF1610 0.61 +0.5 209,884 + GFF1610 0.61 -0.0 209,884 + GFF1610 0.61 -2.1 209,884 + GFF1610 0.61 +0.9 209,884 + GFF1610 0.61 +0.2 209,884 + GFF1610 0.61 +0.8 209,885 - GFF1610 0.61 -0.1 209,885 - GFF1610 0.61 -1.8 209,885 - GFF1610 0.61 +0.7 209,903 - GFF1610 0.62 -0.5 209,903 - GFF1610 0.62 -0.2 209,903 - GFF1610 0.62 +0.4 209,903 - GFF1610 0.62 +0.2
Or see this region's nucleotide sequence