Strain Fitness in Variovorax sp. SCN45 around GFF1588

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
186,052	+				-0.6
186,170	+		GFF1587	0.15	-1.1
186,170	+		GFF1587	0.15	-0.3
186,171	-		GFF1587	0.16	-0.8
186,171	-		GFF1587	0.16	+0.7
186,688	+				-0.3
186,688	+				+1.3
186,688	+				-0.3
186,689	-				-0.0
186,689	-				-0.3
186,689	-				-0.8
186,689	-				+0.5
186,690	+				-0.9
186,690	+				-0.0
186,690	+				+0.0
186,690	+				+1.9
186,690	+				-0.3
186,691	-				+0.3
186,691	-				-0.3
186,691	-				+0.5
186,691	-				+1.1
186,691	-				-0.3
186,691	-				-0.8
186,715	+				+0.0
186,715	+				+0.3
186,716	-				-1.2
186,716	-				-0.5
186,716	-				+2.1
186,806	+				-0.7
186,806	+				-1.5
186,806	+				+1.5
186,806	+				-0.9
186,806	+				-1.3
186,806	+				-0.8
186,807	-				-0.9
186,807	-				+1.0
186,807	-				-0.5
186,807	-				+0.4
186,807	-				+0.1
186,810	+				-0.1
186,810	+				-1.7
186,829	-				-0.4
186,833	+				+0.3
186,833	+				-0.1
186,833	+				-0.5
186,833	+				-0.4
186,833	+				+0.7
186,833	+				+0.7
186,833	+				-1.1
186,833	+				+0.1
186,833	+				-0.3
186,834	-				-0.1
186,834	-				+2.2
186,834	-				+1.2
186,834	-				-0.4
186,834	-				+0.1
186,834	-				+0.1
186,834	-				-0.1
186,834	-				-1.1
186,837	+				-1.1
186,837	+				+2.0
186,837	+				-0.4
186,838	-				+0.0
186,838	-				-0.5
186,838	-				+0.0
186,845	+				-0.1
186,845	+				+0.1
186,845	+				+0.2
186,845	+				+0.0
186,845	+				+0.6
186,845	+				-0.8
186,845	+				-1.1
186,846	-				+1.6
186,885	+				-0.1
186,886	-				-0.1
186,886	-				-0.8
187,110	+		GFF1588	0.20	-0.6
187,110	+		GFF1588	0.20	-0.1
187,111	-		GFF1588	0.20	-0.7
187,344	+		GFF1588	0.39	-0.2
187,345	-		GFF1588	0.39	-0.3
187,347	+		GFF1588	0.39	-0.1
187,631	+		GFF1588	0.62	-0.8
187,640	+		GFF1588	0.63	-1.2
187,827	+		GFF1588	0.78	-1.3
187,827	+		GFF1588	0.78	-0.4
187,828	-		GFF1588	0.78	+0.2
187,828	-		GFF1588	0.78	+0.2
187,828	-		GFF1588	0.78	-0.3
187,828	-		GFF1588	0.78	+2.2
188,142	+				+0.3
188,142	+				+0.1
188,142	+				+0.3
188,142	+				-0.2
188,142	+				-0.8
188,143	-				+2.1
188,143	-				-0.1
188,143	-				+0.1
188,143	-				+0.0
188,187	+		GFF1589	0.13	-0.5
188,187	+		GFF1589	0.13	-1.2
188,188	-		GFF1589	0.13	-1.5
188,188	-		GFF1589	0.13	-0.1
188,190	+		GFF1589	0.13	+0.1
188,190	+		GFF1589	0.13	-0.2
188,191	-		GFF1589	0.13	+2.2
188,191	-		GFF1589	0.13	-0.3
188,199	+		GFF1589	0.15	-0.4
188,200	-		GFF1589	0.15	-0.4
188,200	-		GFF1589	0.15	+3.3
188,342	+		GFF1589	0.40	+0.1
188,425	+		GFF1589	0.54	+1.2
188,425	+		GFF1589	0.54	-0.0
188,425	+		GFF1589	0.54	-0.8
188,426	-		GFF1589	0.54	+1.2
188,426	-		GFF1589	0.54	-1.0
188,526	+		GFF1589	0.72	+0.4
188,667	+				+0.4
188,668	-				-0.8
188,685	+				-0.3
188,686	-				+0.4
188,717	+				-0.9
188,717	+				+0.7
188,734	+				-0.5
188,735	-				+0.8
188,735	-				-0.5
188,735	-				+1.0
188,812	+		GFF1590	0.23	-0.3
188,836	+		GFF1590	0.29	-0.6
188,837	-		GFF1590	0.29	-0.3
188,837	-		GFF1590	0.29	+1.2
188,837	-		GFF1590	0.29	-0.8
188,866	+		GFF1590	0.37	-1.4
188,866	+		GFF1590	0.37	-1.0
188,866	+		GFF1590	0.37	-0.1
188,866	+		GFF1590	0.37	+0.5
188,867	-		GFF1590	0.37	-0.4
188,917	+		GFF1590	0.50	+0.5
189,010	+		GFF1590	0.74	+0.4
189,011	-		GFF1590	0.74	-0.1