Strain Fitness in Variovorax sp. SCN45 around GFF1543

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
139,835	-		GFF1542	0.66	-1.1
139,876	-		GFF1542	0.70	+0.3
139,876	-		GFF1542	0.70	-0.6
140,120	+				-2.0
140,120	+				-0.1
140,120	+				+0.1
140,121	-				-0.1
140,121	-				-0.3
140,121	-				+0.5
140,121	-				-1.8
140,121	-				+0.7
140,121	-				-0.5
140,121	-				+0.3
140,121	-				+0.4
140,121	-				+0.1
140,296	-		GFF1543	0.14	-0.9
140,364	+		GFF1543	0.22	+0.3
140,364	+		GFF1543	0.22	+0.4
140,365	-		GFF1543	0.22	-0.1
140,558	+		GFF1543	0.44	-0.4
140,559	-		GFF1543	0.44	+1.1
140,682	+		GFF1543	0.58	+0.1
140,683	-		GFF1543	0.58	+0.9
140,828	+		GFF1543	0.74	-0.3
140,829	-		GFF1543	0.74	+0.6
141,140	+				+0.2
141,141	-				+0.1
141,398	+		GFF1544	0.17	+0.4
141,398	+		GFF1544	0.17	+0.3
141,399	-		GFF1544	0.17	-1.3
141,399	-		GFF1544	0.17	+0.0
141,512	+		GFF1544	0.23	+0.3
141,512	+		GFF1544	0.23	-0.1
141,512	+		GFF1544	0.23	-0.2
141,513	-		GFF1544	0.23	-1.0
141,513	-		GFF1544	0.23	+0.0