Strain Fitness in Variovorax sp. SCN45 around GFF1529

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
125,951	-		GFF1528	0.28	-2.4
125,951	-		GFF1528	0.28	-2.2
125,951	-		GFF1528	0.28	-0.4
126,025	+		GFF1528	0.33	+1.4
126,026	-		GFF1528	0.34	+0.5
126,037	+		GFF1528	0.34	-0.1
126,037	+		GFF1528	0.34	-0.4
126,038	-		GFF1528	0.35	-0.3
126,050	+		GFF1528	0.35	-0.1
126,050	+		GFF1528	0.35	-0.7
126,050	+		GFF1528	0.35	-1.9
126,050	+		GFF1528	0.35	+0.5
126,050	+		GFF1528	0.35	-0.7
126,050	+		GFF1528	0.35	+0.2
126,051	-		GFF1528	0.36	+0.0
126,051	-		GFF1528	0.36	-0.6
126,051	-		GFF1528	0.36	+0.0
126,136	+		GFF1528	0.42	+0.6
126,136	+		GFF1528	0.42	-0.4
126,136	+		GFF1528	0.42	-0.2
126,136	+		GFF1528	0.42	+0.3
126,136	+		GFF1528	0.42	-0.6
126,136	+		GFF1528	0.42	+1.1
126,137	-		GFF1528	0.42	+0.2
126,137	-		GFF1528	0.42	-0.0
126,137	-		GFF1528	0.42	-0.6
126,137	-		GFF1528	0.42	-0.5
126,137	-		GFF1528	0.42	+0.4
126,137	-		GFF1528	0.42	-1.1
126,138	+		GFF1528	0.43	+0.2
126,138	+		GFF1528	0.43	+0.6
126,138	+		GFF1528	0.43	+0.1
126,138	+		GFF1528	0.43	+1.2
126,139	-		GFF1528	0.43	-2.0
126,258	-		GFF1528	0.52	-0.6
126,384	-		GFF1528	0.62	-0.9
126,493	+		GFF1528	0.71	-0.6
126,494	-		GFF1528	0.71	-2.1
126,506	-		GFF1528	0.72	+2.0
126,506	-		GFF1528	0.72	-1.3
126,506	-		GFF1528	0.72	+1.2
126,514	+		GFF1528	0.72	-0.0
126,515	-		GFF1528	0.73	+0.1
126,580	+		GFF1528	0.78	+0.3
126,580	+		GFF1528	0.78	+1.2
126,581	-		GFF1528	0.78	+0.6
126,581	-		GFF1528	0.78	+0.6
126,764	+				-0.1
126,854	-				+0.2
127,283	-		GFF1529	0.76	-1.0
127,456	+				-0.3
127,457	-				-1.1
127,463	-				+0.2
127,463	-				+0.3
127,578	+				+0.1
127,579	-				-0.3
128,048	+		GFF1530	0.61	+0.7
128,049	-		GFF1530	0.62	-0.1