Strain Fitness in Variovorax sp. SCN45 around GFF1304

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1303 and GFF1304 are separated by 133 nucleotidesGFF1304 and GFF1305 overlap by 4 nucleotides GFF1303 - Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4), at 633,611 to 634,648 GFF1303 GFF1304 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 634,782 to 635,789 GFF1304 GFF1305 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 635,786 to 636,841 GFF1305 Position (kb) 634 635 636Strain fitness (log2 ratio) -3 -2 -1 0 1at 633.989 kb on + strand, within GFF1303at 633.989 kb on + strand, within GFF1303at 633.989 kb on + strand, within GFF1303at 633.989 kb on + strand, within GFF1303at 633.989 kb on + strand, within GFF1303at 633.989 kb on + strand, within GFF1303at 633.989 kb on + strand, within GFF1303at 633.989 kb on + strand, within GFF1303at 633.990 kb on - strand, within GFF1303at 633.990 kb on - strand, within GFF1303at 633.990 kb on - strand, within GFF1303at 633.990 kb on - strand, within GFF1303at 633.990 kb on - strand, within GFF1303at 633.990 kb on - strand, within GFF1303at 633.992 kb on + strand, within GFF1303at 633.993 kb on - strand, within GFF1303at 633.993 kb on - strand, within GFF1303at 633.993 kb on - strand, within GFF1303at 633.993 kb on - strand, within GFF1303at 634.109 kb on + strand, within GFF1303at 634.110 kb on - strand, within GFF1303at 634.110 kb on - strand, within GFF1303at 634.110 kb on - strand, within GFF1303at 634.265 kb on + strand, within GFF1303at 634.266 kb on - strand, within GFF1303at 634.266 kb on - strand, within GFF1303at 634.266 kb on - strand, within GFF1303at 634.266 kb on - strand, within GFF1303at 634.266 kb on - strand, within GFF1303at 634.535 kb on + strand, within GFF1303at 634.535 kb on + strand, within GFF1303at 634.535 kb on + strand, within GFF1303at 634.535 kb on + strand, within GFF1303at 634.536 kb on - strand, within GFF1303at 634.536 kb on - strand, within GFF1303at 634.628 kb on + strandat 634.628 kb on + strandat 634.628 kb on + strandat 634.628 kb on + strandat 634.628 kb on + strandat 634.628 kb on + strandat 634.628 kb on + strandat 634.628 kb on + strandat 634.628 kb on + strandat 634.628 kb on + strandat 634.628 kb on + strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 634.629 kb on - strandat 635.145 kb on + strand, within GFF1304at 635.145 kb on + strand, within GFF1304at 635.145 kb on + strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.146 kb on - strand, within GFF1304at 635.321 kb on + strand, within GFF1304at 635.321 kb on + strand, within GFF1304at 635.322 kb on - strand, within GFF1304at 635.322 kb on - strand, within GFF1304at 635.349 kb on - strand, within GFF1304at 635.349 kb on - strand, within GFF1304at 635.388 kb on + strand, within GFF1304at 635.388 kb on + strand, within GFF1304at 635.388 kb on + strand, within GFF1304at 635.388 kb on + strand, within GFF1304at 635.389 kb on - strand, within GFF1304at 635.389 kb on - strand, within GFF1304at 635.389 kb on - strand, within GFF1304at 635.389 kb on - strand, within GFF1304at 635.389 kb on - strand, within GFF1304at 635.416 kb on + strand, within GFF1304at 635.419 kb on - strand, within GFF1304at 635.419 kb on - strand, within GFF1304at 635.712 kb on + strandat 635.712 kb on + strandat 635.712 kb on + strandat 635.712 kb on + strandat 635.712 kb on + strandat 635.713 kb on - strandat 635.713 kb on - strandat 635.713 kb on - strandat 635.754 kb on + strandat 635.754 kb on + strandat 635.754 kb on + strandat 636.335 kb on + strand, within GFF1305at 636.335 kb on + strand, within GFF1305at 636.336 kb on - strand, within GFF1305at 636.336 kb on - strand, within GFF1305at 636.336 kb on - strand, within GFF1305at 636.476 kb on + strand, within GFF1305at 636.476 kb on + strand, within GFF1305at 636.476 kb on + strand, within GFF1305at 636.477 kb on - strand, within GFF1305at 636.737 kb on + strandat 636.737 kb on + strandat 636.737 kb on + strandat 636.738 kb on - strandat 636.738 kb on - strandat 636.749 kb on + strandat 636.750 kb on - strandat 636.770 kb on + strandat 636.770 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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633,989 + GFF1303 0.36 -0.3
633,989 + GFF1303 0.36 +0.8
633,989 + GFF1303 0.36 -0.7
633,989 + GFF1303 0.36 +0.7
633,989 + GFF1303 0.36 +0.4
633,989 + GFF1303 0.36 +0.2
633,989 + GFF1303 0.36 -0.6
633,989 + GFF1303 0.36 +0.7
633,990 - GFF1303 0.37 -0.8
633,990 - GFF1303 0.37 -2.2
633,990 - GFF1303 0.37 -1.0
633,990 - GFF1303 0.37 -0.1
633,990 - GFF1303 0.37 -1.0
633,990 - GFF1303 0.37 -0.5
633,992 + GFF1303 0.37 -0.0
633,993 - GFF1303 0.37 -0.9
633,993 - GFF1303 0.37 -1.0
633,993 - GFF1303 0.37 -1.6
633,993 - GFF1303 0.37 +0.1
634,109 + GFF1303 0.48 -0.9
634,110 - GFF1303 0.48 -0.3
634,110 - GFF1303 0.48 +1.0
634,110 - GFF1303 0.48 -1.3
634,265 + GFF1303 0.63 +0.2
634,266 - GFF1303 0.63 +0.2
634,266 - GFF1303 0.63 -0.1
634,266 - GFF1303 0.63 -0.1
634,266 - GFF1303 0.63 -0.1
634,266 - GFF1303 0.63 +1.1
634,535 + GFF1303 0.89 -0.7
634,535 + GFF1303 0.89 -0.2
634,535 + GFF1303 0.89 -0.7
634,535 + GFF1303 0.89 -0.8
634,536 - GFF1303 0.89 -0.2
634,536 - GFF1303 0.89 -0.0
634,628 + +0.3
634,628 + -1.3
634,628 + +1.3
634,628 + -0.2
634,628 + -0.3
634,628 + -0.9
634,628 + -0.4
634,628 + -0.4
634,628 + -0.0
634,628 + +1.3
634,628 + -0.5
634,629 - +0.2
634,629 - -0.5
634,629 - +0.0
634,629 - -0.3
634,629 - +0.6
634,629 - -0.5
634,629 - -0.8
634,629 - -0.1
634,629 - -0.5
634,629 - -0.0
634,629 - -0.5
634,629 - -1.3
634,629 - +1.3
634,629 - -0.5
634,629 - -1.0
634,629 - +0.3
634,629 - -0.2
634,629 - -0.1
635,145 + GFF1304 0.36 -2.1
635,145 + GFF1304 0.36 -1.5
635,145 + GFF1304 0.36 +0.3
635,146 - GFF1304 0.36 -0.4
635,146 - GFF1304 0.36 -0.8
635,146 - GFF1304 0.36 -0.3
635,146 - GFF1304 0.36 +0.3
635,146 - GFF1304 0.36 +0.1
635,146 - GFF1304 0.36 -0.5
635,321 + GFF1304 0.53 -0.6
635,321 + GFF1304 0.53 -0.4
635,322 - GFF1304 0.54 -0.5
635,322 - GFF1304 0.54 -0.6
635,349 - GFF1304 0.56 +0.3
635,349 - GFF1304 0.56 -2.0
635,388 + GFF1304 0.60 +0.7
635,388 + GFF1304 0.60 +0.1
635,388 + GFF1304 0.60 +0.5
635,388 + GFF1304 0.60 +0.8
635,389 - GFF1304 0.60 -0.7
635,389 - GFF1304 0.60 +1.3
635,389 - GFF1304 0.60 -0.5
635,389 - GFF1304 0.60 -0.3
635,389 - GFF1304 0.60 -0.8
635,416 + GFF1304 0.63 -0.7
635,419 - GFF1304 0.63 -0.5
635,419 - GFF1304 0.63 -0.9
635,712 + -0.3
635,712 + -0.3
635,712 + -0.5
635,712 + +0.4
635,712 + -0.1
635,713 - +0.1
635,713 - +0.2
635,713 - -0.5
635,754 + -1.0
635,754 + +0.6
635,754 + -0.4
636,335 + GFF1305 0.52 +0.1
636,335 + GFF1305 0.52 +0.5
636,336 - GFF1305 0.52 +0.1
636,336 - GFF1305 0.52 -0.1
636,336 - GFF1305 0.52 -0.7
636,476 + GFF1305 0.65 -1.3
636,476 + GFF1305 0.65 +1.1
636,476 + GFF1305 0.65 -3.1
636,477 - GFF1305 0.65 -1.3
636,737 + +0.5
636,737 + -1.6
636,737 + -0.4
636,738 - -1.1
636,738 - +0.1
636,749 + -1.5
636,750 - -1.4
636,770 + -0.8
636,770 + -0.2

Or see this region's nucleotide sequence