Strain Fitness in Variovorax sp. SCN45 around GFF1184

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1182 and GFF1183 are separated by 197 nucleotidesGFF1183 and GFF1184 are separated by 342 nucleotidesGFF1184 and GFF1185 are separated by 12 nucleotides GFF1182 - FIG00347825: hypothetical protein, at 499,035 to 499,934 GFF1182 GFF1183 - Regulator of nucleoside diphosphate kinase, at 500,132 to 500,533 GFF1183 GFF1184 - UPF0060 membrane protein YnfA, at 500,876 to 501,208 GFF1184 GFF1185 - Transcriptional regulator, AraC family, at 501,221 to 502,084 GFF1185 Position (kb) 500 501 502Strain fitness (log2 ratio) -2 -1 0 1at 500.142 kb on + strandat 500.142 kb on + strandat 500.142 kb on + strandat 500.142 kb on + strandat 500.142 kb on + strandat 500.142 kb on + strandat 500.142 kb on + strandat 500.142 kb on + strandat 500.142 kb on + strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.143 kb on - strandat 500.645 kb on + strandat 500.645 kb on + strandat 500.645 kb on + strandat 500.645 kb on + strandat 500.646 kb on - strandat 500.807 kb on + strandat 500.807 kb on + strandat 500.808 kb on - strandat 500.875 kb on + strandat 500.875 kb on + strandat 500.875 kb on + strandat 500.876 kb on - strandat 500.876 kb on - strandat 500.876 kb on - strandat 500.876 kb on - strandat 500.945 kb on + strand, within GFF1184at 500.945 kb on + strand, within GFF1184at 500.945 kb on + strand, within GFF1184at 500.945 kb on + strand, within GFF1184at 500.945 kb on + strand, within GFF1184at 500.946 kb on - strand, within GFF1184at 500.946 kb on - strand, within GFF1184at 500.946 kb on - strand, within GFF1184at 500.946 kb on - strand, within GFF1184at 500.946 kb on - strand, within GFF1184at 500.946 kb on - strand, within GFF1184at 500.954 kb on + strand, within GFF1184at 500.954 kb on + strand, within GFF1184at 500.954 kb on + strand, within GFF1184at 500.954 kb on + strand, within GFF1184at 500.954 kb on + strand, within GFF1184at 500.955 kb on - strand, within GFF1184at 500.955 kb on - strand, within GFF1184at 500.955 kb on - strand, within GFF1184at 500.955 kb on - strand, within GFF1184at 501.065 kb on + strand, within GFF1184at 501.065 kb on + strand, within GFF1184at 501.065 kb on + strand, within GFF1184at 501.065 kb on + strand, within GFF1184at 501.065 kb on + strand, within GFF1184at 501.066 kb on - strand, within GFF1184at 501.066 kb on - strand, within GFF1184at 501.066 kb on - strand, within GFF1184at 501.066 kb on - strand, within GFF1184at 501.066 kb on - strand, within GFF1184at 501.066 kb on - strand, within GFF1184at 501.075 kb on - strand, within GFF1184at 501.086 kb on + strand, within GFF1184at 501.086 kb on + strand, within GFF1184at 501.086 kb on + strand, within GFF1184at 501.086 kb on + strand, within GFF1184at 501.086 kb on + strand, within GFF1184at 501.086 kb on + strand, within GFF1184at 501.086 kb on + strand, within GFF1184at 501.087 kb on - strand, within GFF1184at 501.087 kb on - strand, within GFF1184at 501.087 kb on - strand, within GFF1184at 501.087 kb on - strand, within GFF1184at 501.303 kb on + strandat 501.304 kb on - strandat 501.304 kb on - strandat 501.304 kb on - strandat 501.336 kb on + strand, within GFF1185at 501.336 kb on + strand, within GFF1185at 501.363 kb on + strand, within GFF1185at 501.363 kb on + strand, within GFF1185at 501.363 kb on + strand, within GFF1185at 501.396 kb on + strand, within GFF1185at 501.423 kb on + strand, within GFF1185at 501.423 kb on + strand, within GFF1185at 501.423 kb on + strand, within GFF1185at 501.437 kb on + strand, within GFF1185at 501.437 kb on + strand, within GFF1185at 501.437 kb on + strand, within GFF1185at 501.438 kb on - strand, within GFF1185at 501.493 kb on - strand, within GFF1185at 501.493 kb on - strand, within GFF1185at 501.501 kb on + strand, within GFF1185at 501.501 kb on + strand, within GFF1185at 501.501 kb on + strand, within GFF1185at 501.501 kb on + strand, within GFF1185at 501.502 kb on - strand, within GFF1185at 501.502 kb on - strand, within GFF1185at 501.502 kb on - strand, within GFF1185at 501.505 kb on - strand, within GFF1185at 501.505 kb on - strand, within GFF1185at 501.505 kb on - strand, within GFF1185at 501.505 kb on - strand, within GFF1185at 501.820 kb on - strand, within GFF1185at 501.939 kb on + strand, within GFF1185at 501.940 kb on - strand, within GFF1185at 502.056 kb on + strandat 502.056 kb on + strandat 502.056 kb on + strandat 502.057 kb on - strandat 502.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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500,142 + +0.3
500,142 + +1.3
500,142 + -0.5
500,142 + +0.6
500,142 + -0.7
500,142 + +1.3
500,142 + -0.5
500,142 + -2.5
500,142 + -1.3
500,143 - -1.5
500,143 - -0.2
500,143 - -1.7
500,143 - -0.2
500,143 - -1.7
500,143 - -0.7
500,143 - +0.3
500,143 - +0.7
500,143 - +0.2
500,143 - -0.2
500,143 - +0.0
500,143 - -0.4
500,645 + +0.2
500,645 + -1.3
500,645 + -1.4
500,645 + -1.0
500,646 - -1.0
500,807 + -0.5
500,807 + -0.6
500,808 - -1.7
500,875 + +0.9
500,875 + +0.2
500,875 + -0.8
500,876 - -0.4
500,876 - -0.5
500,876 - -2.0
500,876 - -0.8
500,945 + GFF1184 0.21 -0.8
500,945 + GFF1184 0.21 +0.2
500,945 + GFF1184 0.21 -0.8
500,945 + GFF1184 0.21 -0.5
500,945 + GFF1184 0.21 -0.7
500,946 - GFF1184 0.21 +0.2
500,946 - GFF1184 0.21 -0.8
500,946 - GFF1184 0.21 -0.6
500,946 - GFF1184 0.21 +0.2
500,946 - GFF1184 0.21 -1.2
500,946 - GFF1184 0.21 -0.5
500,954 + GFF1184 0.23 +0.2
500,954 + GFF1184 0.23 -0.3
500,954 + GFF1184 0.23 -0.3
500,954 + GFF1184 0.23 -0.3
500,954 + GFF1184 0.23 +1.3
500,955 - GFF1184 0.24 -0.6
500,955 - GFF1184 0.24 -0.3
500,955 - GFF1184 0.24 +0.4
500,955 - GFF1184 0.24 -0.7
501,065 + GFF1184 0.57 -0.7
501,065 + GFF1184 0.57 +0.4
501,065 + GFF1184 0.57 -0.8
501,065 + GFF1184 0.57 -0.6
501,065 + GFF1184 0.57 -0.8
501,066 - GFF1184 0.57 -0.2
501,066 - GFF1184 0.57 -1.5
501,066 - GFF1184 0.57 -1.1
501,066 - GFF1184 0.57 -0.8
501,066 - GFF1184 0.57 +0.1
501,066 - GFF1184 0.57 -1.0
501,075 - GFF1184 0.60 -1.3
501,086 + GFF1184 0.63 -1.4
501,086 + GFF1184 0.63 -1.3
501,086 + GFF1184 0.63 +0.1
501,086 + GFF1184 0.63 +0.7
501,086 + GFF1184 0.63 -0.1
501,086 + GFF1184 0.63 -1.1
501,086 + GFF1184 0.63 -0.6
501,087 - GFF1184 0.63 -0.3
501,087 - GFF1184 0.63 -1.3
501,087 - GFF1184 0.63 -1.5
501,087 - GFF1184 0.63 -0.2
501,303 + -1.1
501,304 - -0.7
501,304 - -0.0
501,304 - -0.5
501,336 + GFF1185 0.13 +1.7
501,336 + GFF1185 0.13 -0.2
501,363 + GFF1185 0.16 -0.1
501,363 + GFF1185 0.16 -0.3
501,363 + GFF1185 0.16 -0.7
501,396 + GFF1185 0.20 -1.0
501,423 + GFF1185 0.23 -0.2
501,423 + GFF1185 0.23 -0.4
501,423 + GFF1185 0.23 +1.3
501,437 + GFF1185 0.25 -0.3
501,437 + GFF1185 0.25 -0.2
501,437 + GFF1185 0.25 -0.8
501,438 - GFF1185 0.25 -0.9
501,493 - GFF1185 0.31 -0.6
501,493 - GFF1185 0.31 +0.7
501,501 + GFF1185 0.32 -0.3
501,501 + GFF1185 0.32 +0.0
501,501 + GFF1185 0.32 -0.0
501,501 + GFF1185 0.32 +0.2
501,502 - GFF1185 0.33 +0.7
501,502 - GFF1185 0.33 -0.0
501,502 - GFF1185 0.33 +1.0
501,505 - GFF1185 0.33 +0.8
501,505 - GFF1185 0.33 +0.7
501,505 - GFF1185 0.33 -0.6
501,505 - GFF1185 0.33 +0.2
501,820 - GFF1185 0.69 -0.1
501,939 + GFF1185 0.83 +0.5
501,940 - GFF1185 0.83 -0.7
502,056 + +0.1
502,056 + -0.2
502,056 + -0.2
502,057 - -1.1
502,057 - -0.6

Or see this region's nucleotide sequence