Strain Fitness in Variovorax sp. SCN45 around GFF111

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
139,218	+				+0.4
139,218	+				+0.3
139,218	+				+1.3
139,218	+				-0.2
139,218	+				+0.4
139,219	-				-0.3
139,219	-				+0.1
139,219	-				-0.9
139,219	-				+1.3
139,219	-				-0.1
139,227	+				+1.3
139,442	+		GFF110	0.21	-0.4
139,442	+		GFF110	0.21	-0.4
139,443	-		GFF110	0.21	-0.4
139,443	-		GFF110	0.21	+0.6
139,553	+		GFF110	0.33	-1.5
139,553	+		GFF110	0.33	-0.0
139,553	+		GFF110	0.33	-0.3
139,553	+		GFF110	0.33	+2.3
139,554	-		GFF110	0.33	-0.5
139,745	+		GFF110	0.53	-0.1
139,746	-		GFF110	0.53	-0.1
139,746	-		GFF110	0.53	-0.2
139,746	-		GFF110	0.53	-0.8
139,746	-		GFF110	0.53	-0.7
139,928	+		GFF110	0.72	-0.3
139,928	+		GFF110	0.72	-0.0
139,928	+		GFF110	0.72	+2.3
139,929	-		GFF110	0.72	-1.3
140,121	+				+0.9
140,132	+				-0.5
140,132	+				-0.4
140,278	+				-1.3
140,278	+				-1.4
140,278	+				-0.0
140,279	-				+1.0
140,279	-				+0.3
140,404	+		GFF111	0.20	+0.5
140,404	+		GFF111	0.20	+0.1
140,794	+		GFF111	0.58	+0.2
140,794	+		GFF111	0.58	-0.0
140,795	-		GFF111	0.58	+1.0
140,795	-		GFF111	0.58	+0.9
140,795	-		GFF111	0.58	-0.0
140,795	-		GFF111	0.58	-0.0
141,028	+		GFF111	0.81	+0.0
141,351	+		GFF112	0.17	-0.7
141,351	+		GFF112	0.17	+2.9
141,351	+		GFF112	0.17	-2.0
141,352	-		GFF112	0.17	-1.3
141,352	-		GFF112	0.17	-0.7
141,352	-		GFF112	0.17	-1.3
141,352	-		GFF112	0.17	-0.9
141,352	-		GFF112	0.17	-0.2
141,352	-		GFF112	0.17	-0.1
141,627	+		GFF112	0.53	-0.4
141,627	+		GFF112	0.53	+0.4
141,627	+		GFF112	0.53	-0.7
141,627	+		GFF112	0.53	+1.3
141,628	-		GFF112	0.53	-0.3
141,639	+		GFF112	0.54	+0.0
141,639	+		GFF112	0.54	-0.6
141,640	-		GFF112	0.54	+0.2
141,640	-		GFF112	0.54	-0.9
141,651	+		GFF112	0.56	-2.1
141,652	-		GFF112	0.56	+0.1
141,738	+		GFF112	0.67	-0.3
141,739	-		GFF112	0.67	-0.1