Strain Fitness in Variovorax sp. SCN45 around GFF1052

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
365,927	-				-0.3
366,797	+				-0.1
366,798	-				-0.7
366,841	+		GFF1051	0.36	+1.1
366,842	-		GFF1051	0.37	-0.0
366,910	+				-0.6
366,910	+				-1.2
366,910	+				+0.7
366,910	+				+0.2
366,910	+				+0.0
366,911	-				-0.4
366,911	-				+0.7
366,911	-				-0.2
366,911	-				-1.3
366,952	+				+1.1
366,952	+				-0.1
366,952	+				-0.3
366,952	+				-0.8
366,952	+				-0.7
366,952	+				+0.6
366,953	-				-1.2
366,953	-				+0.6
366,953	-				-1.1
366,953	-				-0.8
366,964	+				-0.9
366,964	+				+0.2
366,965	-				+1.0
366,965	-				-0.7
366,965	-				+1.0
367,159	+		GFF1052	0.42	-0.3
367,159	+		GFF1052	0.42	+0.7
367,312	+		GFF1052	0.69	+0.7
367,313	-		GFF1052	0.69	+0.2
367,313	-		GFF1052	0.69	-0.7
367,313	-		GFF1052	0.69	-0.6
367,324	+		GFF1052	0.71	-0.6
367,324	+		GFF1052	0.71	+0.4
367,324	+		GFF1052	0.71	-0.1
367,324	+		GFF1052	0.71	-0.3
367,324	+		GFF1052	0.71	+1.4
367,324	+		GFF1052	0.71	-1.8
367,324	+		GFF1052	0.71	+1.1
367,324	+		GFF1052	0.71	-0.0
367,325	-		GFF1052	0.71	-0.8
367,325	-		GFF1052	0.71	+0.4
367,325	-		GFF1052	0.71	+0.2
367,325	-		GFF1052	0.71	-0.2
367,450	+				-0.6
367,450	+				-0.5
367,450	+				+0.3
367,474	+				+0.7
367,474	+				-0.9
367,475	-				-3.7
367,475	-				+0.6
367,475	-				-0.8
367,475	-				+0.5
367,566	-				-1.9
367,567	+				-1.6
367,567	+				+0.6
367,567	+				+0.2
367,567	+				-0.5
367,567	+				-2.3
367,567	+				-0.8
367,567	+				+0.3
367,567	+				-0.9
367,567	+				+0.1
367,567	+				+0.7
367,567	+				-0.5
367,567	+				+0.1
367,567	+				-1.8
367,567	+				-0.1
367,567	+				-0.4
367,567	+				-0.2
367,567	+				-1.8
367,568	-				-0.9
367,568	-				-0.5
367,568	-				-0.6
367,568	-				-0.8
367,568	-				+1.0
367,568	-				+1.9
367,568	-				-0.8
367,568	-				-0.0
367,568	-				-0.1
367,568	-				+1.1
367,568	-				-0.0
367,568	-				+2.4
367,568	-				+0.6
367,568	-				+0.1
367,610	+				+0.5
367,610	+				-0.1
367,610	+				+0.6
367,610	+				-0.6
367,610	+				-1.8
367,610	+				+0.8
367,610	+				+0.5
367,610	+				+0.5
367,611	-				+0.2
367,611	-				-1.3
367,611	-				-1.1
367,611	-				-0.1
367,611	-				+0.1
367,611	-				+0.2
367,611	-				-1.6
367,611	-				-1.7
367,611	-				-0.4
367,611	-				+1.4
367,793	+		GFF1053	0.27	-0.1
367,811	+		GFF1053	0.29	+0.2
367,811	+		GFF1053	0.29	+0.2
367,811	+		GFF1053	0.29	-0.6
367,812	-		GFF1053	0.29	-1.2
367,812	-		GFF1053	0.29	-0.5
367,812	-		GFF1053	0.29	+0.6
367,812	-		GFF1053	0.29	-0.6
368,029	+		GFF1053	0.61	-0.5
368,029	+		GFF1053	0.61	-0.4
368,029	+		GFF1053	0.61	-0.6
368,257	+				+1.7
368,257	+				+0.3
368,257	+				-0.2
368,258	-				+0.5
368,258	-				-0.7
368,258	-				+0.3
368,258	-				+0.2
368,258	-				-1.2
368,258	-				+1.4
368,258	-				-1.9
368,334	+				-1.0
368,334	+				-1.2
368,334	+				-0.7
368,334	+				-0.6
368,335	-				-0.2
368,335	-				-0.6
368,335	-				+0.0
368,357	+				-0.4