Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ssuD and ssuC are separated by 10 nucleotides ssuC and ssuB overlap by 4 nucleotides ssuB and pepN are separated by 206 nucleotides
BNILDI_20155: ssuD - FMNH2-dependent alkanesulfonate monooxygenase, at 4,045,522 to 4,046,667
ssuD
BNILDI_20160: ssuC - aliphatic sulfonate ABC transporter permease SsuC, at 4,046,678 to 4,047,469
ssuC
BNILDI_20165: ssuB - aliphatic sulfonates ABC transporter ATP-binding protein, at 4,047,466 to 4,048,233
ssuB
BNILDI_20175: pepN - aminopeptidase N, at 4,048,440 to 4,051,052
pepN
Position (kb) 4046
4047
4048 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4045.836 kb on + strand, within ssuD at 4045.837 kb on - strand, within ssuD at 4045.837 kb on - strand, within ssuD at 4045.947 kb on - strand, within ssuD at 4045.983 kb on + strand, within ssuD at 4045.983 kb on + strand, within ssuD at 4045.984 kb on - strand, within ssuD at 4046.130 kb on - strand, within ssuD at 4046.133 kb on - strand, within ssuD at 4046.283 kb on + strand, within ssuD at 4046.283 kb on + strand, within ssuD at 4046.349 kb on - strand, within ssuD at 4046.352 kb on + strand, within ssuD at 4046.649 kb on + strand at 4046.649 kb on + strand at 4046.677 kb on - strand at 4046.935 kb on + strand, within ssuC at 4046.972 kb on - strand, within ssuC at 4047.085 kb on - strand, within ssuC at 4047.095 kb on + strand, within ssuC at 4047.095 kb on + strand, within ssuC at 4047.095 kb on + strand, within ssuC at 4047.097 kb on + strand, within ssuC at 4047.154 kb on + strand, within ssuC at 4047.154 kb on + strand, within ssuC at 4047.154 kb on + strand, within ssuC at 4047.358 kb on + strand, within ssuC at 4047.359 kb on - strand, within ssuC at 4047.444 kb on - strand at 4047.465 kb on + strand at 4047.472 kb on - strand at 4047.526 kb on + strand at 4047.560 kb on + strand, within ssuB at 4047.561 kb on - strand, within ssuB at 4047.565 kb on - strand, within ssuB at 4047.740 kb on + strand, within ssuB at 4047.923 kb on + strand, within ssuB at 4047.924 kb on - strand, within ssuB at 4048.079 kb on + strand, within ssuB at 4048.279 kb on - strand at 4048.439 kb on - strand at 4048.468 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 4,045,836 + ssuD BNILDI_20155 0.27 -0.9 4,045,837 - ssuD BNILDI_20155 0.27 +0.5 4,045,837 - ssuD BNILDI_20155 0.27 +0.1 4,045,947 - ssuD BNILDI_20155 0.37 -1.1 4,045,983 + ssuD BNILDI_20155 0.40 +0.5 4,045,983 + ssuD BNILDI_20155 0.40 -0.4 4,045,984 - ssuD BNILDI_20155 0.40 +0.1 4,046,130 - ssuD BNILDI_20155 0.53 -1.1 4,046,133 - ssuD BNILDI_20155 0.53 +0.2 4,046,283 + ssuD BNILDI_20155 0.66 +0.1 4,046,283 + ssuD BNILDI_20155 0.66 -1.8 4,046,349 - ssuD BNILDI_20155 0.72 +0.5 4,046,352 + ssuD BNILDI_20155 0.72 +0.2 4,046,649 + -1.0 4,046,649 + +1.1 4,046,677 - -0.4 4,046,935 + ssuC BNILDI_20160 0.32 -0.4 4,046,972 - ssuC BNILDI_20160 0.37 +2.1 4,047,085 - ssuC BNILDI_20160 0.51 +0.9 4,047,095 + ssuC BNILDI_20160 0.53 -1.5 4,047,095 + ssuC BNILDI_20160 0.53 +0.2 4,047,095 + ssuC BNILDI_20160 0.53 +0.4 4,047,097 + ssuC BNILDI_20160 0.53 -0.2 4,047,154 + ssuC BNILDI_20160 0.60 +0.1 4,047,154 + ssuC BNILDI_20160 0.60 -1.0 4,047,154 + ssuC BNILDI_20160 0.60 -0.7 4,047,358 + ssuC BNILDI_20160 0.86 -0.9 4,047,359 - ssuC BNILDI_20160 0.86 +0.2 4,047,444 - +2.1 4,047,465 + -0.2 4,047,472 - -0.8 4,047,526 + +1.1 4,047,560 + ssuB BNILDI_20165 0.12 -0.9 4,047,561 - ssuB BNILDI_20165 0.12 +0.6 4,047,565 - ssuB BNILDI_20165 0.13 +1.1 4,047,740 + ssuB BNILDI_20165 0.36 -0.5 4,047,923 + ssuB BNILDI_20165 0.60 +0.6 4,047,924 - ssuB BNILDI_20165 0.60 +0.3 4,048,079 + ssuB BNILDI_20165 0.80 -0.4 4,048,279 - +0.1 4,048,439 - -0.2 4,048,468 + +0.1
Or see this region's nucleotide sequence