Strain Fitness in Escherichia coli ECRC62 around BNILDI_17995

Experiment: JK38

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK38
3,623,304	+	ldhA	BNILDI_17985	0.61	-0.6
3,623,305	-	ldhA	BNILDI_17985	0.61	+2.2
3,623,480	+	ldhA	BNILDI_17985	0.78	+0.7
3,623,480	+	ldhA	BNILDI_17985	0.78	-1.1
3,623,480	+	ldhA	BNILDI_17985	0.78	-0.1
3,623,480	+	ldhA	BNILDI_17985	0.78	-0.1
3,623,481	-	ldhA	BNILDI_17985	0.78	+1.8
3,623,481	-	ldhA	BNILDI_17985	0.78	+0.4
3,623,481	-	ldhA	BNILDI_17985	0.78	-0.7
3,623,481	-	ldhA	BNILDI_17985	0.78	+1.5
3,623,481	-	ldhA	BNILDI_17985	0.78	+0.9
3,623,649	-				+0.4
3,623,692	+				+0.5
3,623,727	-				+0.1
3,623,735	-				+0.8
3,623,760	-				+0.3
3,623,765	+				-1.4
3,623,766	-				-0.3
3,623,833	+				-1.1
3,623,857	+	hslJ	BNILDI_17990	0.12	-0.5
3,623,857	+	hslJ	BNILDI_17990	0.12	+0.4
3,623,858	-	hslJ	BNILDI_17990	0.13	-0.2
3,623,858	-	hslJ	BNILDI_17990	0.13	-0.5
3,623,894	-	hslJ	BNILDI_17990	0.21	+0.2
3,623,923	+	hslJ	BNILDI_17990	0.28	+1.1
3,623,923	+	hslJ	BNILDI_17990	0.28	-1.2
3,624,036	-	hslJ	BNILDI_17990	0.55	+0.5
3,624,036	-	hslJ	BNILDI_17990	0.55	-0.5
3,624,099	-	hslJ	BNILDI_17990	0.70	+0.3
3,624,196	+				-0.4
3,624,197	-				-0.1
3,624,197	-				-0.1
3,624,197	-				-0.0
3,624,202	-				-0.1
3,624,203	+				-0.2
3,624,204	-				+0.7
3,624,226	-				+1.5
3,624,389	+	ydbJ	BNILDI_17995	0.62	+0.5
3,624,439	+	ydbJ	BNILDI_17995	0.81	-0.4
3,624,440	-	ydbJ	BNILDI_17995	0.81	+1.0
3,624,455	+	ydbJ	BNILDI_17995	0.87	-1.1
3,624,456	-	ydbJ	BNILDI_17995	0.87	-1.1
3,624,534	+				+1.3
3,624,534	+				-0.5
3,624,535	-				+1.1
3,624,537	+				-0.7
3,624,641	-				-0.6
3,624,752	+				+0.3
3,624,753	-				-2.2
3,624,753	-				-0.4
3,624,769	+				+0.1
3,624,833	+				-0.1
3,624,834	-				+0.6
3,624,838	+				-0.5
3,624,839	-				-1.8
3,625,063	-				-0.9
3,625,063	-				-1.3
3,625,141	+	nifJ	BNILDI_18000	0.11	+1.2
3,625,252	+	nifJ	BNILDI_18000	0.14	-0.1
3,625,252	+	nifJ	BNILDI_18000	0.14	+0.9
3,625,402	+	nifJ	BNILDI_18000	0.18	-0.4
3,625,403	-	nifJ	BNILDI_18000	0.18	+0.7
3,625,424	+	nifJ	BNILDI_18000	0.19	-0.1
3,625,424	+	nifJ	BNILDI_18000	0.19	+0.2
3,625,425	-	nifJ	BNILDI_18000	0.19	+1.2
3,625,425	-	nifJ	BNILDI_18000	0.19	+0.9
3,625,457	+	nifJ	BNILDI_18000	0.20	+0.9
3,625,470	-	nifJ	BNILDI_18000	0.20	-0.3
3,625,470	-	nifJ	BNILDI_18000	0.20	+1.5