Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ada and alkB overlap by 1 nucleotides alkB and yojI are separated by 75 nucleotides
BNILDI_13705: ada - bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada, at 2,758,877 to 2,759,941
ada
BNILDI_13710: alkB - DNA oxidative demethylase AlkB, at 2,759,941 to 2,760,591
alkB
BNILDI_13715: yojI - microcin J25 efflux ABC transporter YojI, at 2,760,667 to 2,762,310
yojI
Position (kb)
2759
2760
2761 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2759.039 kb on + strand, within ada at 2759.175 kb on + strand, within ada at 2759.335 kb on + strand, within ada at 2759.336 kb on - strand, within ada at 2759.369 kb on + strand, within ada at 2759.370 kb on - strand, within ada at 2759.407 kb on + strand, within ada at 2759.722 kb on - strand, within ada at 2759.829 kb on + strand, within ada at 2759.830 kb on - strand, within ada at 2759.939 kb on + strand at 2759.939 kb on + strand at 2760.022 kb on - strand, within alkB at 2760.051 kb on + strand, within alkB at 2760.105 kb on + strand, within alkB at 2760.105 kb on + strand, within alkB at 2760.105 kb on + strand, within alkB at 2760.105 kb on + strand, within alkB at 2760.105 kb on + strand, within alkB at 2760.106 kb on - strand, within alkB at 2760.106 kb on - strand, within alkB at 2760.106 kb on - strand, within alkB at 2760.166 kb on + strand, within alkB at 2760.236 kb on + strand, within alkB at 2760.295 kb on - strand, within alkB at 2760.681 kb on - strand at 2760.711 kb on + strand at 2760.761 kb on + strand at 2760.836 kb on + strand, within yojI at 2760.907 kb on + strand, within yojI at 2760.928 kb on - strand, within yojI at 2761.181 kb on - strand, within yojI at 2761.181 kb on - strand, within yojI at 2761.188 kb on + strand, within yojI at 2761.289 kb on - strand, within yojI at 2761.306 kb on + strand, within yojI at 2761.338 kb on + strand, within yojI at 2761.339 kb on - strand, within yojI at 2761.449 kb on + strand, within yojI at 2761.469 kb on - strand, within yojI
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 2,759,039 + ada BNILDI_13705 0.15 -0.2 2,759,175 + ada BNILDI_13705 0.28 -0.9 2,759,335 + ada BNILDI_13705 0.43 -0.2 2,759,336 - ada BNILDI_13705 0.43 -0.2 2,759,369 + ada BNILDI_13705 0.46 -0.9 2,759,370 - ada BNILDI_13705 0.46 -0.4 2,759,407 + ada BNILDI_13705 0.50 +0.4 2,759,722 - ada BNILDI_13705 0.79 -1.2 2,759,829 + ada BNILDI_13705 0.89 +1.0 2,759,830 - ada BNILDI_13705 0.89 -0.8 2,759,939 + +1.4 2,759,939 + -0.5 2,760,022 - alkB BNILDI_13710 0.12 -0.3 2,760,051 + alkB BNILDI_13710 0.17 -0.7 2,760,105 + alkB BNILDI_13710 0.25 +0.8 2,760,105 + alkB BNILDI_13710 0.25 -0.2 2,760,105 + alkB BNILDI_13710 0.25 +0.8 2,760,105 + alkB BNILDI_13710 0.25 -0.2 2,760,105 + alkB BNILDI_13710 0.25 -0.3 2,760,106 - alkB BNILDI_13710 0.25 -1.1 2,760,106 - alkB BNILDI_13710 0.25 +0.6 2,760,106 - alkB BNILDI_13710 0.25 +0.3 2,760,166 + alkB BNILDI_13710 0.35 -1.4 2,760,236 + alkB BNILDI_13710 0.45 -0.7 2,760,295 - alkB BNILDI_13710 0.54 +0.3 2,760,681 - +0.4 2,760,711 + -0.3 2,760,761 + +0.6 2,760,836 + yojI BNILDI_13715 0.10 -0.0 2,760,907 + yojI BNILDI_13715 0.15 +0.2 2,760,928 - yojI BNILDI_13715 0.16 +3.6 2,761,181 - yojI BNILDI_13715 0.31 -0.7 2,761,181 - yojI BNILDI_13715 0.31 +0.3 2,761,188 + yojI BNILDI_13715 0.32 +0.1 2,761,289 - yojI BNILDI_13715 0.38 -0.3 2,761,306 + yojI BNILDI_13715 0.39 -0.2 2,761,338 + yojI BNILDI_13715 0.41 +0.1 2,761,339 - yojI BNILDI_13715 0.41 +0.4 2,761,449 + yojI BNILDI_13715 0.48 +1.1 2,761,469 - yojI BNILDI_13715 0.49 +0.1
Or see this region's nucleotide sequence