Strain Fitness in Escherichia coli ECRC62 around BNILDI_13710

Experiment: JK38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntada and alkB overlap by 1 nucleotidesalkB and yojI are separated by 75 nucleotides BNILDI_13705: ada - bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada, at 2,758,877 to 2,759,941 ada BNILDI_13710: alkB - DNA oxidative demethylase AlkB, at 2,759,941 to 2,760,591 alkB BNILDI_13715: yojI - microcin J25 efflux ABC transporter YojI, at 2,760,667 to 2,762,310 yojI Position (kb) 2759 2760 2761Strain fitness (log2 ratio) -1 0 1 2 3at 2759.039 kb on + strand, within adaat 2759.175 kb on + strand, within adaat 2759.335 kb on + strand, within adaat 2759.336 kb on - strand, within adaat 2759.369 kb on + strand, within adaat 2759.370 kb on - strand, within adaat 2759.407 kb on + strand, within adaat 2759.722 kb on - strand, within adaat 2759.829 kb on + strand, within adaat 2759.830 kb on - strand, within adaat 2759.939 kb on + strandat 2759.939 kb on + strandat 2760.022 kb on - strand, within alkBat 2760.051 kb on + strand, within alkBat 2760.105 kb on + strand, within alkBat 2760.105 kb on + strand, within alkBat 2760.105 kb on + strand, within alkBat 2760.105 kb on + strand, within alkBat 2760.105 kb on + strand, within alkBat 2760.106 kb on - strand, within alkBat 2760.106 kb on - strand, within alkBat 2760.106 kb on - strand, within alkBat 2760.166 kb on + strand, within alkBat 2760.236 kb on + strand, within alkBat 2760.295 kb on - strand, within alkBat 2760.681 kb on - strandat 2760.711 kb on + strandat 2760.761 kb on + strandat 2760.836 kb on + strand, within yojIat 2760.907 kb on + strand, within yojIat 2760.928 kb on - strand, within yojIat 2761.181 kb on - strand, within yojIat 2761.181 kb on - strand, within yojIat 2761.188 kb on + strand, within yojIat 2761.289 kb on - strand, within yojIat 2761.306 kb on + strand, within yojIat 2761.338 kb on + strand, within yojIat 2761.339 kb on - strand, within yojIat 2761.449 kb on + strand, within yojIat 2761.469 kb on - strand, within yojI

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Per-strain Table

Position Strand Gene LocusTag Fraction JK38
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2,759,039 + ada BNILDI_13705 0.15 -0.2
2,759,175 + ada BNILDI_13705 0.28 -0.9
2,759,335 + ada BNILDI_13705 0.43 -0.2
2,759,336 - ada BNILDI_13705 0.43 -0.2
2,759,369 + ada BNILDI_13705 0.46 -0.9
2,759,370 - ada BNILDI_13705 0.46 -0.4
2,759,407 + ada BNILDI_13705 0.50 +0.4
2,759,722 - ada BNILDI_13705 0.79 -1.2
2,759,829 + ada BNILDI_13705 0.89 +1.0
2,759,830 - ada BNILDI_13705 0.89 -0.8
2,759,939 + +1.4
2,759,939 + -0.5
2,760,022 - alkB BNILDI_13710 0.12 -0.3
2,760,051 + alkB BNILDI_13710 0.17 -0.7
2,760,105 + alkB BNILDI_13710 0.25 +0.8
2,760,105 + alkB BNILDI_13710 0.25 -0.2
2,760,105 + alkB BNILDI_13710 0.25 +0.8
2,760,105 + alkB BNILDI_13710 0.25 -0.2
2,760,105 + alkB BNILDI_13710 0.25 -0.3
2,760,106 - alkB BNILDI_13710 0.25 -1.1
2,760,106 - alkB BNILDI_13710 0.25 +0.6
2,760,106 - alkB BNILDI_13710 0.25 +0.3
2,760,166 + alkB BNILDI_13710 0.35 -1.4
2,760,236 + alkB BNILDI_13710 0.45 -0.7
2,760,295 - alkB BNILDI_13710 0.54 +0.3
2,760,681 - +0.4
2,760,711 + -0.3
2,760,761 + +0.6
2,760,836 + yojI BNILDI_13715 0.10 -0.0
2,760,907 + yojI BNILDI_13715 0.15 +0.2
2,760,928 - yojI BNILDI_13715 0.16 +3.6
2,761,181 - yojI BNILDI_13715 0.31 -0.7
2,761,181 - yojI BNILDI_13715 0.31 +0.3
2,761,188 + yojI BNILDI_13715 0.32 +0.1
2,761,289 - yojI BNILDI_13715 0.38 -0.3
2,761,306 + yojI BNILDI_13715 0.39 -0.2
2,761,338 + yojI BNILDI_13715 0.41 +0.1
2,761,339 - yojI BNILDI_13715 0.41 +0.4
2,761,449 + yojI BNILDI_13715 0.48 +1.1
2,761,469 - yojI BNILDI_13715 0.49 +0.1

Or see this region's nucleotide sequence