Strain Fitness in Escherichia coli ECRC62 around BNILDI_13045

Experiment: JK38

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttnp-IS3 and aidA are separated by 118 nucleotidesaidA and BNILDI_13045 are separated by 150 nucleotidesBNILDI_13045 and BNILDI_13050 are separated by 62 nucleotides BNILDI_13035: tnp-IS3 - IS3 family transposase, at 2,610,654 to 2,611,400 tnp-IS3 BNILDI_13040: aidA - Ag43/Cah family autotransporter adhesin, at 2,611,519 to 2,611,989 aidA BNILDI_13045: BNILDI_13045 - Bifunctional tail protein, at 2,612,140 to 2,614,380 _13045 BNILDI_13050: BNILDI_13050 - Glucosyl transferase GtrII, at 2,614,443 to 2,615,873 _13050 Position (kb) 2612 2613 2614 2615Strain fitness (log2 ratio) -2 -1 0 1 2at 2611.324 kb on - strand, within tnp-IS3at 2611.324 kb on - strand, within tnp-IS3at 2611.324 kb on - strand, within tnp-IS3at 2611.394 kb on + strandat 2611.437 kb on - strandat 2611.437 kb on - strandat 2611.449 kb on - strandat 2611.468 kb on + strandat 2611.554 kb on - strandat 2611.919 kb on + strand, within aidAat 2611.967 kb on + strandat 2611.968 kb on - strandat 2612.005 kb on - strandat 2612.472 kb on - strand, within BNILDI_13045at 2612.577 kb on + strand, within BNILDI_13045at 2612.604 kb on + strand, within BNILDI_13045at 2612.731 kb on + strand, within BNILDI_13045at 2612.731 kb on + strand, within BNILDI_13045at 2612.731 kb on + strand, within BNILDI_13045at 2612.732 kb on - strand, within BNILDI_13045at 2612.732 kb on - strand, within BNILDI_13045at 2612.775 kb on + strand, within BNILDI_13045at 2612.775 kb on + strand, within BNILDI_13045at 2612.775 kb on + strand, within BNILDI_13045at 2612.776 kb on - strand, within BNILDI_13045at 2612.785 kb on + strand, within BNILDI_13045at 2612.786 kb on - strand, within BNILDI_13045at 2612.794 kb on + strand, within BNILDI_13045at 2612.880 kb on + strand, within BNILDI_13045at 2612.880 kb on + strand, within BNILDI_13045at 2612.880 kb on + strand, within BNILDI_13045at 2612.880 kb on + strand, within BNILDI_13045at 2612.881 kb on - strand, within BNILDI_13045at 2612.881 kb on - strand, within BNILDI_13045at 2612.916 kb on + strand, within BNILDI_13045at 2612.916 kb on + strand, within BNILDI_13045at 2612.959 kb on - strand, within BNILDI_13045at 2612.994 kb on - strand, within BNILDI_13045at 2613.048 kb on + strand, within BNILDI_13045at 2613.048 kb on + strand, within BNILDI_13045at 2613.049 kb on - strand, within BNILDI_13045at 2613.098 kb on - strand, within BNILDI_13045at 2613.098 kb on - strand, within BNILDI_13045at 2613.145 kb on - strand, within BNILDI_13045at 2613.229 kb on + strand, within BNILDI_13045at 2613.251 kb on + strand, within BNILDI_13045at 2613.318 kb on + strand, within BNILDI_13045at 2613.336 kb on + strand, within BNILDI_13045at 2613.337 kb on - strand, within BNILDI_13045at 2613.357 kb on + strand, within BNILDI_13045at 2613.495 kb on + strand, within BNILDI_13045at 2613.708 kb on - strand, within BNILDI_13045at 2613.710 kb on - strand, within BNILDI_13045at 2614.006 kb on - strand, within BNILDI_13045at 2614.023 kb on + strand, within BNILDI_13045at 2614.059 kb on + strand, within BNILDI_13045at 2614.118 kb on + strand, within BNILDI_13045at 2614.479 kb on + strandat 2614.603 kb on - strand, within BNILDI_13050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JK38
remove
2,611,324 - tnp-IS3 BNILDI_13035 0.90 -2.1
2,611,324 - tnp-IS3 BNILDI_13035 0.90 -0.4
2,611,324 - tnp-IS3 BNILDI_13035 0.90 +0.1
2,611,394 + +0.0
2,611,437 - +0.4
2,611,437 - +0.4
2,611,449 - -0.1
2,611,468 + +0.3
2,611,554 - +0.8
2,611,919 + aidA BNILDI_13040 0.85 -0.4
2,611,967 + -0.2
2,611,968 - -0.0
2,612,005 - -1.6
2,612,472 - BNILDI_13045 0.15 +0.8
2,612,577 + BNILDI_13045 0.20 +0.0
2,612,604 + BNILDI_13045 0.21 +0.1
2,612,731 + BNILDI_13045 0.26 -0.5
2,612,731 + BNILDI_13045 0.26 -1.3
2,612,731 + BNILDI_13045 0.26 +0.0
2,612,732 - BNILDI_13045 0.26 -0.5
2,612,732 - BNILDI_13045 0.26 -0.8
2,612,775 + BNILDI_13045 0.28 -0.5
2,612,775 + BNILDI_13045 0.28 +0.9
2,612,775 + BNILDI_13045 0.28 -0.8
2,612,776 - BNILDI_13045 0.28 -0.2
2,612,785 + BNILDI_13045 0.29 +0.1
2,612,786 - BNILDI_13045 0.29 +0.3
2,612,794 + BNILDI_13045 0.29 +0.2
2,612,880 + BNILDI_13045 0.33 -1.1
2,612,880 + BNILDI_13045 0.33 +2.0
2,612,880 + BNILDI_13045 0.33 -2.1
2,612,880 + BNILDI_13045 0.33 +0.2
2,612,881 - BNILDI_13045 0.33 +0.6
2,612,881 - BNILDI_13045 0.33 -0.6
2,612,916 + BNILDI_13045 0.35 -0.5
2,612,916 + BNILDI_13045 0.35 -0.0
2,612,959 - BNILDI_13045 0.37 -0.5
2,612,994 - BNILDI_13045 0.38 +0.5
2,613,048 + BNILDI_13045 0.41 +0.4
2,613,048 + BNILDI_13045 0.41 +0.0
2,613,049 - BNILDI_13045 0.41 +0.4
2,613,098 - BNILDI_13045 0.43 +0.6
2,613,098 - BNILDI_13045 0.43 +1.6
2,613,145 - BNILDI_13045 0.45 -0.5
2,613,229 + BNILDI_13045 0.49 +0.5
2,613,251 + BNILDI_13045 0.50 +0.0
2,613,318 + BNILDI_13045 0.53 +1.6
2,613,336 + BNILDI_13045 0.53 -1.2
2,613,337 - BNILDI_13045 0.53 -0.2
2,613,357 + BNILDI_13045 0.54 -0.7
2,613,495 + BNILDI_13045 0.60 -2.3
2,613,708 - BNILDI_13045 0.70 -1.2
2,613,710 - BNILDI_13045 0.70 -0.4
2,614,006 - BNILDI_13045 0.83 +0.4
2,614,023 + BNILDI_13045 0.84 -0.3
2,614,059 + BNILDI_13045 0.86 +1.6
2,614,118 + BNILDI_13045 0.88 +1.4
2,614,479 + -1.0
2,614,603 - BNILDI_13050 0.11 -2.0

Or see this region's nucleotide sequence