Strain Fitness in Escherichia coli ECRC62 around BNILDI_12965

Experiment: JK38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntevgS and evgA are separated by 4 nucleotidesevgA and evgL overlap by 4 nucleotidesevgL and emrK are separated by 389 nucleotides BNILDI_12960: evgS - acid-sensing system histidine kinase EvgS, at 2,594,207 to 2,597,800 evgS BNILDI_12965: evgA - acid-sensing system DNA-binding response regulator EvgA, at 2,597,805 to 2,598,419 evgA BNILDI_12970: evgL - Protein EvgL, at 2,598,416 to 2,598,445 evgL BNILDI_12975: emrK - multidrug efflux MFS transporter periplasmic adaptor subunit EmrK, at 2,598,835 to 2,599,998 emrK Position (kb) 2597 2598 2599Strain fitness (log2 ratio) -1 0 1at 2597.655 kb on - strandat 2597.957 kb on + strand, within evgAat 2597.958 kb on - strand, within evgAat 2598.095 kb on + strand, within evgAat 2598.467 kb on - strandat 2598.542 kb on + strandat 2598.630 kb on - strandat 2598.657 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK38
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2,597,655 - +0.5
2,597,957 + evgA BNILDI_12965 0.25 -0.6
2,597,958 - evgA BNILDI_12965 0.25 -0.4
2,598,095 + evgA BNILDI_12965 0.47 +0.0
2,598,467 - +1.6
2,598,542 + -0.3
2,598,630 - -1.4
2,598,657 - +1.2

Or see this region's nucleotide sequence