Strain Fitness in Escherichia coli ECRC62 around BNILDI_09945

Experiment: JK38

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK38
1,995,416	+	ygfA	BNILDI_09930	0.59	-1.9
1,995,418	+	ygfA	BNILDI_09930	0.60	+0.1
1,995,418	+	ygfA	BNILDI_09930	0.60	+0.8
1,995,419	-	ygfA	BNILDI_09930	0.60	-0.8
1,995,448	+	ygfA	BNILDI_09930	0.65	+0.3
1,995,448	+	ygfA	BNILDI_09930	0.65	-0.2
1,995,449	-	ygfA	BNILDI_09930	0.65	-1.3
1,995,449	-	ygfA	BNILDI_09930	0.65	+0.6
1,995,449	-	ygfA	BNILDI_09930	0.65	+0.8
1,995,491	-	ygfA	BNILDI_09930	0.72	-0.3
1,995,649	+				-0.7
1,995,649	+				-0.8
1,995,650	-				+0.1
1,995,674	+				-0.3
1,995,884	+				-0.7
1,995,885	-				+0.7
1,995,954	+	zapA	BNILDI_09940	0.15	+1.3
1,995,954	+	zapA	BNILDI_09940	0.15	+0.1
1,995,966	+	zapA	BNILDI_09940	0.18	-0.1
1,995,966	+	zapA	BNILDI_09940	0.18	-0.9
1,995,967	-	zapA	BNILDI_09940	0.18	+1.1
1,996,001	+	zapA	BNILDI_09940	0.29	-0.6
1,996,002	-	zapA	BNILDI_09940	0.29	+0.4
1,996,048	+	zapA	BNILDI_09940	0.43	-0.5
1,996,088	+	zapA	BNILDI_09940	0.55	-0.9
1,996,101	-	zapA	BNILDI_09940	0.59	-2.0
1,996,303	+				+0.7
1,996,304	-				+0.4
1,996,304	-				-0.8
1,996,304	-				+1.1
1,996,304	-				-0.3
1,996,305	+				+0.3
1,996,305	+				+0.2
1,996,305	+				+0.7
1,996,305	+				+2.1
1,996,305	+				+0.3
1,996,305	+				-0.5
1,996,305	+				-0.0
1,996,305	+				-0.1
1,996,305	+				-0.2
1,996,306	-				-0.1
1,996,306	-				+0.2
1,996,306	-				-0.5
1,996,306	-				+0.4
1,996,306	-				+0.8
1,996,310	-				-0.2
1,996,363	-				-0.9
1,996,367	+				-0.7
1,996,367	+				+0.3
1,996,367	+				+0.6
1,996,368	-				-0.4
1,996,368	-				-2.6
1,996,368	-				-1.9
1,996,402	+				-1.6
1,996,403	-				+0.3
1,996,410	+				-1.7
1,996,512	+	ygfB	BNILDI_09945	0.19	+0.4
1,996,512	+	ygfB	BNILDI_09945	0.19	+1.1
1,996,513	-	ygfB	BNILDI_09945	0.19	-2.0
1,996,549	-	ygfB	BNILDI_09945	0.25	-1.7
1,996,609	+	ygfB	BNILDI_09945	0.36	+1.7
1,996,667	+	ygfB	BNILDI_09945	0.46	+1.1
1,996,802	-	ygfB	BNILDI_09945	0.69	-1.1
1,996,802	-	ygfB	BNILDI_09945	0.69	-0.3
1,996,892	+	ygfB	BNILDI_09945	0.84	-0.6
1,996,892	+	ygfB	BNILDI_09945	0.84	-0.2
1,996,893	-	ygfB	BNILDI_09945	0.85	-0.9
1,996,974	+				-1.1
1,996,974	+				+0.0
1,996,975	-				-1.2
1,996,975	-				-0.9
1,997,107	+				-0.5
1,997,391	+	pepP	BNILDI_09950	0.29	-0.6
1,997,694	+	pepP	BNILDI_09950	0.52	+0.1
1,997,696	+	pepP	BNILDI_09950	0.52	+0.1
1,997,877	+	pepP	BNILDI_09950	0.66	-0.1
1,997,877	+	pepP	BNILDI_09950	0.66	-1.1