Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt speB and loiP are separated by 205 nucleotides loiP and tkt are separated by 277 nucleotides
BNILDI_09765: speB - agmatinase, at 1,964,691 to 1,965,611
speB
BNILDI_09770: loiP - metalloprotease LoiP, at 1,965,817 to 1,966,575
loiP
BNILDI_09775: tkt - transketolase, at 1,966,853 to 1,968,844
tkt
Position (kb) 1965
1966
1967 Strain fitness (log2 ratio) -2
-1
0
1 at 1964.865 kb on - strand, within speB at 1964.865 kb on - strand, within speB at 1964.965 kb on + strand, within speB at 1964.967 kb on + strand, within speB at 1964.967 kb on + strand, within speB at 1965.045 kb on - strand, within speB at 1965.127 kb on + strand, within speB at 1965.192 kb on + strand, within speB at 1965.193 kb on - strand, within speB at 1965.278 kb on + strand, within speB at 1965.356 kb on + strand, within speB at 1965.357 kb on - strand, within speB at 1965.459 kb on - strand, within speB at 1965.505 kb on + strand, within speB at 1965.582 kb on + strand at 1965.582 kb on + strand at 1965.683 kb on + strand at 1965.797 kb on - strand at 1965.822 kb on + strand at 1965.823 kb on - strand at 1966.111 kb on + strand, within loiP at 1966.129 kb on - strand, within loiP at 1966.224 kb on + strand, within loiP at 1966.224 kb on + strand, within loiP at 1966.224 kb on + strand, within loiP at 1966.295 kb on + strand, within loiP at 1966.295 kb on + strand, within loiP at 1966.295 kb on + strand, within loiP at 1966.295 kb on + strand, within loiP at 1966.295 kb on + strand, within loiP at 1966.296 kb on - strand, within loiP at 1966.296 kb on - strand, within loiP at 1966.296 kb on - strand, within loiP at 1966.326 kb on + strand, within loiP at 1966.350 kb on + strand, within loiP at 1966.350 kb on + strand, within loiP at 1966.351 kb on - strand, within loiP at 1966.351 kb on - strand, within loiP at 1966.351 kb on - strand, within loiP at 1966.351 kb on - strand, within loiP at 1966.370 kb on + strand, within loiP at 1966.513 kb on - strand at 1966.559 kb on - strand at 1966.653 kb on - strand at 1966.680 kb on - strand at 1966.741 kb on + strand at 1966.864 kb on + strand at 1966.882 kb on + strand at 1967.067 kb on - strand, within tkt at 1967.137 kb on + strand, within tkt at 1967.294 kb on + strand, within tkt at 1967.301 kb on - strand, within tkt
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 1,964,865 - speB BNILDI_09765 0.19 -0.7 1,964,865 - speB BNILDI_09765 0.19 -1.3 1,964,965 + speB BNILDI_09765 0.30 +0.8 1,964,967 + speB BNILDI_09765 0.30 +0.1 1,964,967 + speB BNILDI_09765 0.30 +0.9 1,965,045 - speB BNILDI_09765 0.38 +0.7 1,965,127 + speB BNILDI_09765 0.47 -0.4 1,965,192 + speB BNILDI_09765 0.54 +0.5 1,965,193 - speB BNILDI_09765 0.55 +1.7 1,965,278 + speB BNILDI_09765 0.64 -0.3 1,965,356 + speB BNILDI_09765 0.72 +0.1 1,965,357 - speB BNILDI_09765 0.72 +0.7 1,965,459 - speB BNILDI_09765 0.83 -0.9 1,965,505 + speB BNILDI_09765 0.88 +1.5 1,965,582 + -0.2 1,965,582 + -0.9 1,965,683 + -2.0 1,965,797 - +0.6 1,965,822 + +0.3 1,965,823 - +0.4 1,966,111 + loiP BNILDI_09770 0.39 +0.7 1,966,129 - loiP BNILDI_09770 0.41 -1.0 1,966,224 + loiP BNILDI_09770 0.54 -0.9 1,966,224 + loiP BNILDI_09770 0.54 -0.1 1,966,224 + loiP BNILDI_09770 0.54 -0.4 1,966,295 + loiP BNILDI_09770 0.63 -0.2 1,966,295 + loiP BNILDI_09770 0.63 -0.2 1,966,295 + loiP BNILDI_09770 0.63 +0.7 1,966,295 + loiP BNILDI_09770 0.63 -0.2 1,966,295 + loiP BNILDI_09770 0.63 +0.6 1,966,296 - loiP BNILDI_09770 0.63 +0.1 1,966,296 - loiP BNILDI_09770 0.63 -0.3 1,966,296 - loiP BNILDI_09770 0.63 +0.7 1,966,326 + loiP BNILDI_09770 0.67 -1.3 1,966,350 + loiP BNILDI_09770 0.70 -2.0 1,966,350 + loiP BNILDI_09770 0.70 -0.5 1,966,351 - loiP BNILDI_09770 0.70 -2.0 1,966,351 - loiP BNILDI_09770 0.70 -0.3 1,966,351 - loiP BNILDI_09770 0.70 -0.1 1,966,351 - loiP BNILDI_09770 0.70 -0.9 1,966,370 + loiP BNILDI_09770 0.73 +0.0 1,966,513 - +0.9 1,966,559 - +0.3 1,966,653 - -0.7 1,966,680 - -0.5 1,966,741 + -0.8 1,966,864 + -1.1 1,966,882 + -1.7 1,967,067 - tkt BNILDI_09775 0.11 -1.1 1,967,137 + tkt BNILDI_09775 0.14 -2.4 1,967,294 + tkt BNILDI_09775 0.22 +1.7 1,967,301 - tkt BNILDI_09775 0.22 +0.7
Or see this region's nucleotide sequence