Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cyaA and cyaY are separated by 39 nucleotides cyaY and BNILDI_04955 are separated by 47 nucleotides
BNILDI_04945: cyaA - class I adenylate cyclase, at 977,871 to 980,417
cyaA
BNILDI_04950: cyaY - iron donor protein CyaY, at 980,457 to 980,777
cyaY
BNILDI_04955: BNILDI_04955 - DKNYY family protein, at 980,825 to 982,138
_04955
Position (kb) 980
981 Strain fitness (log2 ratio) -2
-1
0
1
2 at 979.549 kb on - strand, within cyaA at 979.598 kb on + strand, within cyaA at 979.823 kb on + strand, within cyaA at 979.954 kb on + strand, within cyaA at 979.954 kb on + strand, within cyaA at 980.136 kb on - strand, within cyaA at 980.138 kb on + strand, within cyaA at 980.139 kb on - strand, within cyaA at 980.142 kb on + strand, within cyaA at 980.143 kb on - strand, within cyaA at 980.256 kb on + strand at 980.295 kb on + strand at 980.295 kb on + strand at 980.296 kb on - strand at 980.398 kb on + strand at 980.441 kb on + strand at 980.783 kb on + strand at 980.811 kb on - strand at 980.888 kb on - strand at 980.888 kb on - strand at 980.915 kb on + strand at 980.915 kb on + strand at 980.916 kb on - strand at 980.916 kb on - strand at 980.916 kb on - strand at 980.962 kb on + strand, within BNILDI_04955 at 980.962 kb on + strand, within BNILDI_04955 at 980.990 kb on - strand, within BNILDI_04955 at 980.990 kb on - strand, within BNILDI_04955 at 981.028 kb on + strand, within BNILDI_04955 at 981.090 kb on + strand, within BNILDI_04955 at 981.090 kb on + strand, within BNILDI_04955 at 981.091 kb on - strand, within BNILDI_04955 at 981.199 kb on - strand, within BNILDI_04955 at 981.199 kb on - strand, within BNILDI_04955 at 981.212 kb on - strand, within BNILDI_04955 at 981.214 kb on - strand, within BNILDI_04955 at 981.259 kb on + strand, within BNILDI_04955 at 981.266 kb on + strand, within BNILDI_04955 at 981.267 kb on - strand, within BNILDI_04955 at 981.267 kb on - strand, within BNILDI_04955 at 981.267 kb on - strand, within BNILDI_04955 at 981.311 kb on - strand, within BNILDI_04955 at 981.336 kb on - strand, within BNILDI_04955 at 981.336 kb on - strand, within BNILDI_04955 at 981.380 kb on + strand, within BNILDI_04955 at 981.413 kb on - strand, within BNILDI_04955 at 981.498 kb on - strand, within BNILDI_04955 at 981.502 kb on - strand, within BNILDI_04955 at 981.574 kb on + strand, within BNILDI_04955 at 981.574 kb on + strand, within BNILDI_04955 at 981.574 kb on + strand, within BNILDI_04955 at 981.574 kb on + strand, within BNILDI_04955 at 981.596 kb on + strand, within BNILDI_04955 at 981.604 kb on + strand, within BNILDI_04955 at 981.604 kb on + strand, within BNILDI_04955 at 981.677 kb on - strand, within BNILDI_04955 at 981.754 kb on - strand, within BNILDI_04955 at 981.761 kb on - strand, within BNILDI_04955 at 981.762 kb on + strand, within BNILDI_04955 at 981.762 kb on + strand, within BNILDI_04955 at 981.763 kb on - strand, within BNILDI_04955 at 981.763 kb on - strand, within BNILDI_04955
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 979,549 - cyaA BNILDI_04945 0.66 -0.5 979,598 + cyaA BNILDI_04945 0.68 -1.0 979,823 + cyaA BNILDI_04945 0.77 +1.3 979,954 + cyaA BNILDI_04945 0.82 -1.1 979,954 + cyaA BNILDI_04945 0.82 -1.4 980,136 - cyaA BNILDI_04945 0.89 -1.6 980,138 + cyaA BNILDI_04945 0.89 +0.6 980,139 - cyaA BNILDI_04945 0.89 -1.1 980,142 + cyaA BNILDI_04945 0.89 -0.1 980,143 - cyaA BNILDI_04945 0.89 +0.4 980,256 + -0.7 980,295 + -0.6 980,295 + -0.1 980,296 - +0.6 980,398 + +0.9 980,441 + -1.4 980,783 + -1.8 980,811 - +0.3 980,888 - -1.3 980,888 - +0.3 980,915 + -0.5 980,915 + -1.5 980,916 - +0.3 980,916 - +0.4 980,916 - +1.9 980,962 + BNILDI_04955 0.10 -0.2 980,962 + BNILDI_04955 0.10 -0.1 980,990 - BNILDI_04955 0.13 -0.4 980,990 - BNILDI_04955 0.13 -0.1 981,028 + BNILDI_04955 0.15 -0.3 981,090 + BNILDI_04955 0.20 +0.1 981,090 + BNILDI_04955 0.20 -0.6 981,091 - BNILDI_04955 0.20 -0.3 981,199 - BNILDI_04955 0.28 -0.6 981,199 - BNILDI_04955 0.28 -0.0 981,212 - BNILDI_04955 0.29 -0.5 981,214 - BNILDI_04955 0.30 -0.0 981,259 + BNILDI_04955 0.33 -0.3 981,266 + BNILDI_04955 0.34 +0.1 981,267 - BNILDI_04955 0.34 -0.5 981,267 - BNILDI_04955 0.34 -0.2 981,267 - BNILDI_04955 0.34 -1.1 981,311 - BNILDI_04955 0.37 +0.9 981,336 - BNILDI_04955 0.39 -0.4 981,336 - BNILDI_04955 0.39 +0.5 981,380 + BNILDI_04955 0.42 -1.7 981,413 - BNILDI_04955 0.45 +0.6 981,498 - BNILDI_04955 0.51 +1.3 981,502 - BNILDI_04955 0.52 +0.2 981,574 + BNILDI_04955 0.57 -1.7 981,574 + BNILDI_04955 0.57 +0.4 981,574 + BNILDI_04955 0.57 -0.6 981,574 + BNILDI_04955 0.57 -0.1 981,596 + BNILDI_04955 0.59 -0.1 981,604 + BNILDI_04955 0.59 -0.1 981,604 + BNILDI_04955 0.59 +1.3 981,677 - BNILDI_04955 0.65 +0.1 981,754 - BNILDI_04955 0.71 -0.2 981,761 - BNILDI_04955 0.71 +0.7 981,762 + BNILDI_04955 0.71 -0.4 981,762 + BNILDI_04955 0.71 -1.9 981,763 - BNILDI_04955 0.71 -0.7 981,763 - BNILDI_04955 0.71 -0.6
Or see this region's nucleotide sequence