Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wzyE and rffM are separated by 2 nucleotides rffM and yifK are separated by 190 nucleotides yifK and Arg_trna are separated by 102 nucleotides Arg_trna and His_trna are separated by 58 nucleotides His_trna and Leu_trna are separated by 20 nucleotides Leu_trna and Pro_trna are separated by 42 nucleotides Pro_trna and aslB are separated by 146 nucleotides
BNILDI_04860: wzyE - ECA oligosaccharide polymerase, at 965,526 to 966,878
wzyE
BNILDI_04865: rffM - lipopolysaccharide N-acetylmannosaminouronosyltransferase, at 966,881 to 967,621
rffM
BNILDI_04870: yifK - amino acid permease, at 967,812 to 969,197
yifK
BNILDI_04875: Arg_trna - tRNA-Arg(ccg), at 969,300 to 969,376
_trna
BNILDI_04880: His_trna - tRNA-His(gtg), at 969,435 to 969,510
_trna
BNILDI_04885: Leu_trna - tRNA-Leu(cag), at 969,531 to 969,617
_trna
BNILDI_04890: Pro_trna - tRNA-Pro(tgg), at 969,660 to 969,736
_trna
BNILDI_04895: aslB - anaerobic sulfatase maturase, at 969,883 to 971,118
aslB
Position (kb) 967
968
969
970 Strain fitness (log2 ratio) -2
-1
0
1
2 at 966.843 kb on - strand at 966.887 kb on - strand at 966.909 kb on - strand at 966.909 kb on - strand at 966.910 kb on + strand at 966.924 kb on + strand at 966.989 kb on - strand, within rffM at 966.989 kb on - strand, within rffM at 967.042 kb on + strand, within rffM at 967.042 kb on + strand, within rffM at 967.042 kb on + strand, within rffM at 967.043 kb on - strand, within rffM at 967.062 kb on + strand, within rffM at 967.063 kb on - strand, within rffM at 967.063 kb on - strand, within rffM at 967.082 kb on - strand, within rffM at 967.085 kb on + strand, within rffM at 967.107 kb on + strand, within rffM at 967.108 kb on - strand, within rffM at 967.259 kb on - strand, within rffM at 967.445 kb on + strand, within rffM at 967.445 kb on + strand, within rffM at 967.445 kb on + strand, within rffM at 967.445 kb on + strand, within rffM at 967.446 kb on - strand, within rffM at 967.446 kb on - strand, within rffM at 967.446 kb on - strand, within rffM at 967.447 kb on + strand, within rffM at 967.448 kb on - strand, within rffM at 967.466 kb on + strand, within rffM at 967.467 kb on - strand, within rffM at 967.467 kb on - strand, within rffM at 967.467 kb on - strand, within rffM at 967.489 kb on - strand, within rffM at 967.536 kb on - strand, within rffM at 967.589 kb on + strand at 967.593 kb on + strand at 967.681 kb on - strand at 967.731 kb on - strand at 967.756 kb on + strand at 967.811 kb on + strand at 967.821 kb on - strand at 967.835 kb on - strand at 967.945 kb on + strand at 967.956 kb on + strand, within yifK at 967.958 kb on + strand, within yifK at 968.058 kb on + strand, within yifK at 968.058 kb on + strand, within yifK at 968.060 kb on + strand, within yifK at 968.060 kb on + strand, within yifK at 968.061 kb on - strand, within yifK at 968.061 kb on - strand, within yifK at 968.152 kb on - strand, within yifK at 968.248 kb on - strand, within yifK at 968.367 kb on - strand, within yifK at 968.558 kb on - strand, within yifK at 968.651 kb on + strand, within yifK at 968.721 kb on + strand, within yifK at 968.721 kb on + strand, within yifK at 968.721 kb on + strand, within yifK at 968.722 kb on - strand, within yifK at 968.722 kb on - strand, within yifK at 968.722 kb on - strand, within yifK at 968.735 kb on + strand, within yifK at 968.735 kb on + strand, within yifK at 968.736 kb on - strand, within yifK at 968.736 kb on - strand, within yifK at 968.828 kb on + strand, within yifK at 968.828 kb on + strand, within yifK at 968.828 kb on + strand, within yifK at 968.829 kb on - strand, within yifK at 968.829 kb on - strand, within yifK at 968.829 kb on - strand, within yifK at 968.829 kb on - strand, within yifK at 968.835 kb on - strand, within yifK at 968.842 kb on + strand, within yifK at 968.842 kb on + strand, within yifK at 968.862 kb on + strand, within yifK at 968.862 kb on + strand, within yifK at 968.862 kb on + strand, within yifK at 968.862 kb on + strand, within yifK at 968.863 kb on - strand, within yifK at 968.863 kb on - strand, within yifK at 968.863 kb on - strand, within yifK at 968.896 kb on - strand, within yifK at 968.901 kb on + strand, within yifK at 968.902 kb on - strand, within yifK at 968.979 kb on - strand, within yifK at 969.033 kb on + strand, within yifK at 969.033 kb on + strand, within yifK at 969.033 kb on + strand, within yifK at 969.033 kb on + strand, within yifK at 969.034 kb on - strand, within yifK at 969.034 kb on - strand, within yifK at 969.034 kb on - strand, within yifK at 969.034 kb on - strand, within yifK at 969.034 kb on - strand, within yifK at 969.038 kb on - strand, within yifK at 969.075 kb on + strand at 969.076 kb on - strand at 969.095 kb on + strand at 969.096 kb on - strand at 969.162 kb on - strand at 969.183 kb on - strand at 969.408 kb on + strand at 969.811 kb on + strand at 969.946 kb on - strand at 969.962 kb on - strand at 970.039 kb on + strand, within aslB at 970.039 kb on + strand, within aslB at 970.052 kb on - strand, within aslB at 970.162 kb on + strand, within aslB at 970.181 kb on + strand, within aslB at 970.182 kb on - strand, within aslB at 970.182 kb on - strand, within aslB at 970.182 kb on - strand, within aslB at 970.185 kb on + strand, within aslB at 970.186 kb on - strand, within aslB at 970.186 kb on - strand, within aslB
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 966,843 - +0.3 966,887 - +0.3 966,909 - -0.4 966,909 - -0.6 966,910 + -0.2 966,924 + -1.3 966,989 - rffM BNILDI_04865 0.15 -0.2 966,989 - rffM BNILDI_04865 0.15 -0.3 967,042 + rffM BNILDI_04865 0.22 +1.9 967,042 + rffM BNILDI_04865 0.22 -0.3 967,042 + rffM BNILDI_04865 0.22 -0.2 967,043 - rffM BNILDI_04865 0.22 +0.6 967,062 + rffM BNILDI_04865 0.24 +0.4 967,063 - rffM BNILDI_04865 0.25 -0.5 967,063 - rffM BNILDI_04865 0.25 +0.1 967,082 - rffM BNILDI_04865 0.27 +0.3 967,085 + rffM BNILDI_04865 0.28 -0.2 967,107 + rffM BNILDI_04865 0.30 +0.9 967,108 - rffM BNILDI_04865 0.31 -1.2 967,259 - rffM BNILDI_04865 0.51 +0.3 967,445 + rffM BNILDI_04865 0.76 +0.5 967,445 + rffM BNILDI_04865 0.76 -0.1 967,445 + rffM BNILDI_04865 0.76 +0.1 967,445 + rffM BNILDI_04865 0.76 -0.9 967,446 - rffM BNILDI_04865 0.76 -0.8 967,446 - rffM BNILDI_04865 0.76 -1.6 967,446 - rffM BNILDI_04865 0.76 -0.4 967,447 + rffM BNILDI_04865 0.76 -0.2 967,448 - rffM BNILDI_04865 0.77 +0.1 967,466 + rffM BNILDI_04865 0.79 -0.1 967,467 - rffM BNILDI_04865 0.79 +1.6 967,467 - rffM BNILDI_04865 0.79 +0.9 967,467 - rffM BNILDI_04865 0.79 +2.7 967,489 - rffM BNILDI_04865 0.82 -1.3 967,536 - rffM BNILDI_04865 0.88 -0.2 967,589 + +0.1 967,593 + +0.1 967,681 - +0.0 967,731 - -0.4 967,756 + +0.3 967,811 + -0.1 967,821 - -0.6 967,835 - -0.2 967,945 + +0.6 967,956 + yifK BNILDI_04870 0.10 +0.1 967,958 + yifK BNILDI_04870 0.11 +0.3 968,058 + yifK BNILDI_04870 0.18 +0.5 968,058 + yifK BNILDI_04870 0.18 -0.1 968,060 + yifK BNILDI_04870 0.18 +2.2 968,060 + yifK BNILDI_04870 0.18 -0.9 968,061 - yifK BNILDI_04870 0.18 -0.6 968,061 - yifK BNILDI_04870 0.18 -0.5 968,152 - yifK BNILDI_04870 0.25 +0.6 968,248 - yifK BNILDI_04870 0.31 +1.3 968,367 - yifK BNILDI_04870 0.40 +1.2 968,558 - yifK BNILDI_04870 0.54 -0.3 968,651 + yifK BNILDI_04870 0.61 +0.1 968,721 + yifK BNILDI_04870 0.66 -0.7 968,721 + yifK BNILDI_04870 0.66 +0.6 968,721 + yifK BNILDI_04870 0.66 +1.9 968,722 - yifK BNILDI_04870 0.66 +0.9 968,722 - yifK BNILDI_04870 0.66 -1.4 968,722 - yifK BNILDI_04870 0.66 -0.5 968,735 + yifK BNILDI_04870 0.67 -0.6 968,735 + yifK BNILDI_04870 0.67 -1.0 968,736 - yifK BNILDI_04870 0.67 -0.9 968,736 - yifK BNILDI_04870 0.67 -0.8 968,828 + yifK BNILDI_04870 0.73 +0.2 968,828 + yifK BNILDI_04870 0.73 -0.1 968,828 + yifK BNILDI_04870 0.73 -0.0 968,829 - yifK BNILDI_04870 0.73 +0.0 968,829 - yifK BNILDI_04870 0.73 -0.8 968,829 - yifK BNILDI_04870 0.73 +0.0 968,829 - yifK BNILDI_04870 0.73 -0.0 968,835 - yifK BNILDI_04870 0.74 +0.3 968,842 + yifK BNILDI_04870 0.74 -1.6 968,842 + yifK BNILDI_04870 0.74 +1.3 968,862 + yifK BNILDI_04870 0.76 +0.6 968,862 + yifK BNILDI_04870 0.76 +1.2 968,862 + yifK BNILDI_04870 0.76 +0.8 968,862 + yifK BNILDI_04870 0.76 +1.1 968,863 - yifK BNILDI_04870 0.76 +0.5 968,863 - yifK BNILDI_04870 0.76 -0.1 968,863 - yifK BNILDI_04870 0.76 -0.8 968,896 - yifK BNILDI_04870 0.78 +1.3 968,901 + yifK BNILDI_04870 0.79 -0.4 968,902 - yifK BNILDI_04870 0.79 +0.3 968,979 - yifK BNILDI_04870 0.84 -0.1 969,033 + yifK BNILDI_04870 0.88 +0.8 969,033 + yifK BNILDI_04870 0.88 +0.3 969,033 + yifK BNILDI_04870 0.88 -0.3 969,033 + yifK BNILDI_04870 0.88 +0.1 969,034 - yifK BNILDI_04870 0.88 -0.2 969,034 - yifK BNILDI_04870 0.88 +0.1 969,034 - yifK BNILDI_04870 0.88 +0.9 969,034 - yifK BNILDI_04870 0.88 +1.4 969,034 - yifK BNILDI_04870 0.88 +0.9 969,038 - yifK BNILDI_04870 0.88 -0.0 969,075 + +0.2 969,076 - -0.1 969,095 + +1.9 969,096 - -0.0 969,162 - -0.0 969,183 - +0.3 969,408 + -0.1 969,811 + +0.7 969,946 - +1.3 969,962 - -0.8 970,039 + aslB BNILDI_04895 0.13 -0.1 970,039 + aslB BNILDI_04895 0.13 -0.7 970,052 - aslB BNILDI_04895 0.14 +0.5 970,162 + aslB BNILDI_04895 0.23 -1.0 970,181 + aslB BNILDI_04895 0.24 -1.0 970,182 - aslB BNILDI_04895 0.24 +0.3 970,182 - aslB BNILDI_04895 0.24 -2.1 970,182 - aslB BNILDI_04895 0.24 +0.9 970,185 + aslB BNILDI_04895 0.24 +0.3 970,186 - aslB BNILDI_04895 0.25 -0.1 970,186 - aslB BNILDI_04895 0.25 +0.6
Or see this region's nucleotide sequence