Strain Fitness in Escherichia coli ECRC62 around BNILDI_04815

Experiment: JK38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwecA and wzzE are separated by 11 nucleotideswzzE and wecB are separated by 55 nucleotides BNILDI_04810: wecA - UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase, at 954,841 to 955,944 wecA BNILDI_04815: wzzE - ECA polysaccharide chain length modulation protein, at 955,956 to 957,002 wzzE BNILDI_04820: wecB - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 957,058 to 958,188 wecB Position (kb) 955 956 957 958Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 954.980 kb on + strand, within wecAat 954.980 kb on + strand, within wecAat 954.981 kb on - strand, within wecAat 955.007 kb on - strand, within wecAat 955.043 kb on - strand, within wecAat 955.045 kb on + strand, within wecAat 955.045 kb on + strand, within wecAat 955.045 kb on + strand, within wecAat 955.045 kb on + strand, within wecAat 955.046 kb on - strand, within wecAat 955.046 kb on - strand, within wecAat 955.046 kb on - strand, within wecAat 955.047 kb on + strand, within wecAat 955.048 kb on - strand, within wecAat 955.048 kb on - strand, within wecAat 955.048 kb on - strand, within wecAat 955.148 kb on + strand, within wecAat 955.170 kb on + strand, within wecAat 955.170 kb on + strand, within wecAat 955.170 kb on + strand, within wecAat 955.171 kb on - strand, within wecAat 955.171 kb on - strand, within wecAat 955.171 kb on - strand, within wecAat 955.193 kb on - strand, within wecAat 955.210 kb on + strand, within wecAat 955.210 kb on + strand, within wecAat 955.212 kb on + strand, within wecAat 955.212 kb on + strand, within wecAat 955.212 kb on + strand, within wecAat 955.212 kb on + strand, within wecAat 955.213 kb on - strand, within wecAat 955.213 kb on - strand, within wecAat 955.213 kb on - strand, within wecAat 955.213 kb on - strand, within wecAat 955.266 kb on - strand, within wecAat 955.435 kb on + strand, within wecAat 955.435 kb on + strand, within wecAat 955.436 kb on - strand, within wecAat 955.436 kb on - strand, within wecAat 955.436 kb on - strand, within wecAat 955.436 kb on - strand, within wecAat 955.436 kb on - strand, within wecAat 955.471 kb on + strand, within wecAat 955.500 kb on + strand, within wecAat 955.501 kb on - strand, within wecAat 955.522 kb on - strand, within wecAat 955.623 kb on + strand, within wecAat 955.623 kb on + strand, within wecAat 955.624 kb on - strand, within wecAat 955.628 kb on - strand, within wecAat 955.677 kb on + strand, within wecAat 955.677 kb on + strand, within wecAat 955.707 kb on + strand, within wecAat 955.734 kb on + strand, within wecAat 955.781 kb on - strand, within wecAat 955.855 kb on - strandat 955.881 kb on + strandat 955.942 kb on + strandat 955.942 kb on + strandat 956.047 kb on + strandat 956.095 kb on - strand, within wzzEat 956.135 kb on + strand, within wzzEat 956.172 kb on + strand, within wzzEat 956.256 kb on + strand, within wzzEat 956.257 kb on - strand, within wzzEat 956.325 kb on + strand, within wzzEat 956.325 kb on + strand, within wzzEat 956.326 kb on - strand, within wzzEat 956.326 kb on - strand, within wzzEat 956.326 kb on - strand, within wzzEat 956.326 kb on - strand, within wzzEat 956.326 kb on - strand, within wzzEat 956.384 kb on + strand, within wzzEat 956.414 kb on + strand, within wzzEat 956.471 kb on + strand, within wzzEat 956.487 kb on + strand, within wzzEat 956.487 kb on + strand, within wzzEat 956.488 kb on - strand, within wzzEat 956.614 kb on - strand, within wzzEat 956.614 kb on - strand, within wzzEat 956.670 kb on - strand, within wzzEat 956.800 kb on - strand, within wzzEat 956.822 kb on - strand, within wzzEat 956.936 kb on + strandat 956.936 kb on + strandat 956.936 kb on + strandat 956.937 kb on - strandat 956.937 kb on - strandat 957.001 kb on - strandat 957.074 kb on + strandat 957.236 kb on + strand, within wecBat 957.236 kb on + strand, within wecBat 957.237 kb on - strand, within wecBat 957.237 kb on - strand, within wecBat 957.291 kb on - strand, within wecBat 957.297 kb on + strand, within wecBat 957.388 kb on - strand, within wecBat 957.416 kb on + strand, within wecBat 957.433 kb on + strand, within wecBat 957.433 kb on + strand, within wecBat 957.462 kb on + strand, within wecBat 957.462 kb on + strand, within wecBat 957.463 kb on - strand, within wecBat 957.463 kb on - strand, within wecBat 957.488 kb on - strand, within wecBat 957.488 kb on - strand, within wecBat 957.488 kb on - strand, within wecBat 957.567 kb on + strand, within wecBat 957.568 kb on - strand, within wecBat 957.568 kb on - strand, within wecBat 957.570 kb on + strand, within wecBat 957.570 kb on + strand, within wecBat 957.571 kb on - strand, within wecBat 957.874 kb on + strand, within wecBat 957.874 kb on + strand, within wecBat 957.874 kb on + strand, within wecBat 957.875 kb on - strand, within wecBat 957.878 kb on + strand, within wecB

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Per-strain Table

Position Strand Gene LocusTag Fraction JK38
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954,980 + wecA BNILDI_04810 0.13 -2.8
954,980 + wecA BNILDI_04810 0.13 -5.1
954,981 - wecA BNILDI_04810 0.13 -2.5
955,007 - wecA BNILDI_04810 0.15 -2.2
955,043 - wecA BNILDI_04810 0.18 -1.8
955,045 + wecA BNILDI_04810 0.18 -2.7
955,045 + wecA BNILDI_04810 0.18 -3.3
955,045 + wecA BNILDI_04810 0.18 -3.8
955,045 + wecA BNILDI_04810 0.18 -3.1
955,046 - wecA BNILDI_04810 0.19 -2.0
955,046 - wecA BNILDI_04810 0.19 -0.7
955,046 - wecA BNILDI_04810 0.19 -3.0
955,047 + wecA BNILDI_04810 0.19 -1.8
955,048 - wecA BNILDI_04810 0.19 -1.5
955,048 - wecA BNILDI_04810 0.19 -3.7
955,048 - wecA BNILDI_04810 0.19 -1.9
955,148 + wecA BNILDI_04810 0.28 -2.1
955,170 + wecA BNILDI_04810 0.30 -3.3
955,170 + wecA BNILDI_04810 0.30 -4.5
955,170 + wecA BNILDI_04810 0.30 -0.9
955,171 - wecA BNILDI_04810 0.30 -2.3
955,171 - wecA BNILDI_04810 0.30 -2.2
955,171 - wecA BNILDI_04810 0.30 -2.8
955,193 - wecA BNILDI_04810 0.32 -1.4
955,210 + wecA BNILDI_04810 0.33 -3.2
955,210 + wecA BNILDI_04810 0.33 +0.3
955,212 + wecA BNILDI_04810 0.34 -1.5
955,212 + wecA BNILDI_04810 0.34 -0.7
955,212 + wecA BNILDI_04810 0.34 -3.7
955,212 + wecA BNILDI_04810 0.34 -2.8
955,213 - wecA BNILDI_04810 0.34 -5.6
955,213 - wecA BNILDI_04810 0.34 -7.4
955,213 - wecA BNILDI_04810 0.34 -7.2
955,213 - wecA BNILDI_04810 0.34 -6.6
955,266 - wecA BNILDI_04810 0.38 -3.0
955,435 + wecA BNILDI_04810 0.54 -3.4
955,435 + wecA BNILDI_04810 0.54 -4.2
955,436 - wecA BNILDI_04810 0.54 -1.7
955,436 - wecA BNILDI_04810 0.54 -2.7
955,436 - wecA BNILDI_04810 0.54 -5.7
955,436 - wecA BNILDI_04810 0.54 -3.2
955,436 - wecA BNILDI_04810 0.54 -0.7
955,471 + wecA BNILDI_04810 0.57 -1.8
955,500 + wecA BNILDI_04810 0.60 -1.2
955,501 - wecA BNILDI_04810 0.60 -0.7
955,522 - wecA BNILDI_04810 0.62 -0.4
955,623 + wecA BNILDI_04810 0.71 -2.4
955,623 + wecA BNILDI_04810 0.71 -1.5
955,624 - wecA BNILDI_04810 0.71 -3.0
955,628 - wecA BNILDI_04810 0.71 -4.3
955,677 + wecA BNILDI_04810 0.76 -3.0
955,677 + wecA BNILDI_04810 0.76 -2.1
955,707 + wecA BNILDI_04810 0.78 -4.8
955,734 + wecA BNILDI_04810 0.81 -3.0
955,781 - wecA BNILDI_04810 0.85 -2.5
955,855 - -0.1
955,881 + -6.4
955,942 + +1.9
955,942 + -3.1
956,047 + -2.3
956,095 - wzzE BNILDI_04815 0.13 -0.5
956,135 + wzzE BNILDI_04815 0.17 -2.4
956,172 + wzzE BNILDI_04815 0.21 -1.7
956,256 + wzzE BNILDI_04815 0.29 +0.9
956,257 - wzzE BNILDI_04815 0.29 -2.0
956,325 + wzzE BNILDI_04815 0.35 +1.9
956,325 + wzzE BNILDI_04815 0.35 -1.9
956,326 - wzzE BNILDI_04815 0.35 -0.4
956,326 - wzzE BNILDI_04815 0.35 -1.5
956,326 - wzzE BNILDI_04815 0.35 -1.8
956,326 - wzzE BNILDI_04815 0.35 +0.5
956,326 - wzzE BNILDI_04815 0.35 -0.9
956,384 + wzzE BNILDI_04815 0.41 +0.3
956,414 + wzzE BNILDI_04815 0.44 -1.1
956,471 + wzzE BNILDI_04815 0.49 +0.3
956,487 + wzzE BNILDI_04815 0.51 +0.8
956,487 + wzzE BNILDI_04815 0.51 -0.9
956,488 - wzzE BNILDI_04815 0.51 +0.9
956,614 - wzzE BNILDI_04815 0.63 -0.7
956,614 - wzzE BNILDI_04815 0.63 +0.7
956,670 - wzzE BNILDI_04815 0.68 -0.2
956,800 - wzzE BNILDI_04815 0.81 +0.0
956,822 - wzzE BNILDI_04815 0.83 -1.2
956,936 + +0.3
956,936 + -0.5
956,936 + -0.3
956,937 - +1.3
956,937 - +2.9
957,001 - -0.3
957,074 + +0.9
957,236 + wecB BNILDI_04820 0.16 -1.0
957,236 + wecB BNILDI_04820 0.16 -0.0
957,237 - wecB BNILDI_04820 0.16 +0.9
957,237 - wecB BNILDI_04820 0.16 +0.4
957,291 - wecB BNILDI_04820 0.21 +0.2
957,297 + wecB BNILDI_04820 0.21 +0.1
957,388 - wecB BNILDI_04820 0.29 -0.2
957,416 + wecB BNILDI_04820 0.32 +0.4
957,433 + wecB BNILDI_04820 0.33 -1.1
957,433 + wecB BNILDI_04820 0.33 -1.0
957,462 + wecB BNILDI_04820 0.36 +1.2
957,462 + wecB BNILDI_04820 0.36 -1.4
957,463 - wecB BNILDI_04820 0.36 +0.3
957,463 - wecB BNILDI_04820 0.36 +0.3
957,488 - wecB BNILDI_04820 0.38 +0.0
957,488 - wecB BNILDI_04820 0.38 -0.4
957,488 - wecB BNILDI_04820 0.38 -0.6
957,567 + wecB BNILDI_04820 0.45 +0.1
957,568 - wecB BNILDI_04820 0.45 +0.6
957,568 - wecB BNILDI_04820 0.45 -0.7
957,570 + wecB BNILDI_04820 0.45 -0.0
957,570 + wecB BNILDI_04820 0.45 +0.6
957,571 - wecB BNILDI_04820 0.45 -0.3
957,874 + wecB BNILDI_04820 0.72 -0.0
957,874 + wecB BNILDI_04820 0.72 +1.4
957,874 + wecB BNILDI_04820 0.72 +1.1
957,875 - wecB BNILDI_04820 0.72 +0.3
957,878 + wecB BNILDI_04820 0.73 -2.8

Or see this region's nucleotide sequence