Strain Fitness in Escherichia coli ECRC62 around BNILDI_04815
Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | JK38 |
|---|---|---|---|---|---|
| remove | |||||
| 954,980 | + | wecA | BNILDI_04810 | 0.13 | -2.8 |
| 954,980 | + | wecA | BNILDI_04810 | 0.13 | -5.1 |
| 954,981 | - | wecA | BNILDI_04810 | 0.13 | -2.5 |
| 955,007 | - | wecA | BNILDI_04810 | 0.15 | -2.2 |
| 955,043 | - | wecA | BNILDI_04810 | 0.18 | -1.8 |
| 955,045 | + | wecA | BNILDI_04810 | 0.18 | -2.7 |
| 955,045 | + | wecA | BNILDI_04810 | 0.18 | -3.3 |
| 955,045 | + | wecA | BNILDI_04810 | 0.18 | -3.8 |
| 955,045 | + | wecA | BNILDI_04810 | 0.18 | -3.1 |
| 955,046 | - | wecA | BNILDI_04810 | 0.19 | -2.0 |
| 955,046 | - | wecA | BNILDI_04810 | 0.19 | -0.7 |
| 955,046 | - | wecA | BNILDI_04810 | 0.19 | -3.0 |
| 955,047 | + | wecA | BNILDI_04810 | 0.19 | -1.8 |
| 955,048 | - | wecA | BNILDI_04810 | 0.19 | -1.5 |
| 955,048 | - | wecA | BNILDI_04810 | 0.19 | -3.7 |
| 955,048 | - | wecA | BNILDI_04810 | 0.19 | -1.9 |
| 955,148 | + | wecA | BNILDI_04810 | 0.28 | -2.1 |
| 955,170 | + | wecA | BNILDI_04810 | 0.30 | -3.3 |
| 955,170 | + | wecA | BNILDI_04810 | 0.30 | -4.5 |
| 955,170 | + | wecA | BNILDI_04810 | 0.30 | -0.9 |
| 955,171 | - | wecA | BNILDI_04810 | 0.30 | -2.3 |
| 955,171 | - | wecA | BNILDI_04810 | 0.30 | -2.2 |
| 955,171 | - | wecA | BNILDI_04810 | 0.30 | -2.8 |
| 955,193 | - | wecA | BNILDI_04810 | 0.32 | -1.4 |
| 955,210 | + | wecA | BNILDI_04810 | 0.33 | -3.2 |
| 955,210 | + | wecA | BNILDI_04810 | 0.33 | +0.3 |
| 955,212 | + | wecA | BNILDI_04810 | 0.34 | -1.5 |
| 955,212 | + | wecA | BNILDI_04810 | 0.34 | -0.7 |
| 955,212 | + | wecA | BNILDI_04810 | 0.34 | -3.7 |
| 955,212 | + | wecA | BNILDI_04810 | 0.34 | -2.8 |
| 955,213 | - | wecA | BNILDI_04810 | 0.34 | -5.6 |
| 955,213 | - | wecA | BNILDI_04810 | 0.34 | -7.4 |
| 955,213 | - | wecA | BNILDI_04810 | 0.34 | -7.2 |
| 955,213 | - | wecA | BNILDI_04810 | 0.34 | -6.6 |
| 955,266 | - | wecA | BNILDI_04810 | 0.38 | -3.0 |
| 955,435 | + | wecA | BNILDI_04810 | 0.54 | -3.4 |
| 955,435 | + | wecA | BNILDI_04810 | 0.54 | -4.2 |
| 955,436 | - | wecA | BNILDI_04810 | 0.54 | -1.7 |
| 955,436 | - | wecA | BNILDI_04810 | 0.54 | -2.7 |
| 955,436 | - | wecA | BNILDI_04810 | 0.54 | -5.7 |
| 955,436 | - | wecA | BNILDI_04810 | 0.54 | -3.2 |
| 955,436 | - | wecA | BNILDI_04810 | 0.54 | -0.7 |
| 955,471 | + | wecA | BNILDI_04810 | 0.57 | -1.8 |
| 955,500 | + | wecA | BNILDI_04810 | 0.60 | -1.2 |
| 955,501 | - | wecA | BNILDI_04810 | 0.60 | -0.7 |
| 955,522 | - | wecA | BNILDI_04810 | 0.62 | -0.4 |
| 955,623 | + | wecA | BNILDI_04810 | 0.71 | -2.4 |
| 955,623 | + | wecA | BNILDI_04810 | 0.71 | -1.5 |
| 955,624 | - | wecA | BNILDI_04810 | 0.71 | -3.0 |
| 955,628 | - | wecA | BNILDI_04810 | 0.71 | -4.3 |
| 955,677 | + | wecA | BNILDI_04810 | 0.76 | -3.0 |
| 955,677 | + | wecA | BNILDI_04810 | 0.76 | -2.1 |
| 955,707 | + | wecA | BNILDI_04810 | 0.78 | -4.8 |
| 955,734 | + | wecA | BNILDI_04810 | 0.81 | -3.0 |
| 955,781 | - | wecA | BNILDI_04810 | 0.85 | -2.5 |
| 955,855 | - | -0.1 | |||
| 955,881 | + | -6.4 | |||
| 955,942 | + | +1.9 | |||
| 955,942 | + | -3.1 | |||
| 956,047 | + | -2.3 | |||
| 956,095 | - | wzzE | BNILDI_04815 | 0.13 | -0.5 |
| 956,135 | + | wzzE | BNILDI_04815 | 0.17 | -2.4 |
| 956,172 | + | wzzE | BNILDI_04815 | 0.21 | -1.7 |
| 956,256 | + | wzzE | BNILDI_04815 | 0.29 | +0.9 |
| 956,257 | - | wzzE | BNILDI_04815 | 0.29 | -2.0 |
| 956,325 | + | wzzE | BNILDI_04815 | 0.35 | +1.9 |
| 956,325 | + | wzzE | BNILDI_04815 | 0.35 | -1.9 |
| 956,326 | - | wzzE | BNILDI_04815 | 0.35 | -0.4 |
| 956,326 | - | wzzE | BNILDI_04815 | 0.35 | -1.5 |
| 956,326 | - | wzzE | BNILDI_04815 | 0.35 | -1.8 |
| 956,326 | - | wzzE | BNILDI_04815 | 0.35 | +0.5 |
| 956,326 | - | wzzE | BNILDI_04815 | 0.35 | -0.9 |
| 956,384 | + | wzzE | BNILDI_04815 | 0.41 | +0.3 |
| 956,414 | + | wzzE | BNILDI_04815 | 0.44 | -1.1 |
| 956,471 | + | wzzE | BNILDI_04815 | 0.49 | +0.3 |
| 956,487 | + | wzzE | BNILDI_04815 | 0.51 | +0.8 |
| 956,487 | + | wzzE | BNILDI_04815 | 0.51 | -0.9 |
| 956,488 | - | wzzE | BNILDI_04815 | 0.51 | +0.9 |
| 956,614 | - | wzzE | BNILDI_04815 | 0.63 | -0.7 |
| 956,614 | - | wzzE | BNILDI_04815 | 0.63 | +0.7 |
| 956,670 | - | wzzE | BNILDI_04815 | 0.68 | -0.2 |
| 956,800 | - | wzzE | BNILDI_04815 | 0.81 | +0.0 |
| 956,822 | - | wzzE | BNILDI_04815 | 0.83 | -1.2 |
| 956,936 | + | +0.3 | |||
| 956,936 | + | -0.5 | |||
| 956,936 | + | -0.3 | |||
| 956,937 | - | +1.3 | |||
| 956,937 | - | +2.9 | |||
| 957,001 | - | -0.3 | |||
| 957,074 | + | +0.9 | |||
| 957,236 | + | wecB | BNILDI_04820 | 0.16 | -1.0 |
| 957,236 | + | wecB | BNILDI_04820 | 0.16 | -0.0 |
| 957,237 | - | wecB | BNILDI_04820 | 0.16 | +0.9 |
| 957,237 | - | wecB | BNILDI_04820 | 0.16 | +0.4 |
| 957,291 | - | wecB | BNILDI_04820 | 0.21 | +0.2 |
| 957,297 | + | wecB | BNILDI_04820 | 0.21 | +0.1 |
| 957,388 | - | wecB | BNILDI_04820 | 0.29 | -0.2 |
| 957,416 | + | wecB | BNILDI_04820 | 0.32 | +0.4 |
| 957,433 | + | wecB | BNILDI_04820 | 0.33 | -1.1 |
| 957,433 | + | wecB | BNILDI_04820 | 0.33 | -1.0 |
| 957,462 | + | wecB | BNILDI_04820 | 0.36 | +1.2 |
| 957,462 | + | wecB | BNILDI_04820 | 0.36 | -1.4 |
| 957,463 | - | wecB | BNILDI_04820 | 0.36 | +0.3 |
| 957,463 | - | wecB | BNILDI_04820 | 0.36 | +0.3 |
| 957,488 | - | wecB | BNILDI_04820 | 0.38 | +0.0 |
| 957,488 | - | wecB | BNILDI_04820 | 0.38 | -0.4 |
| 957,488 | - | wecB | BNILDI_04820 | 0.38 | -0.6 |
| 957,567 | + | wecB | BNILDI_04820 | 0.45 | +0.1 |
| 957,568 | - | wecB | BNILDI_04820 | 0.45 | +0.6 |
| 957,568 | - | wecB | BNILDI_04820 | 0.45 | -0.7 |
| 957,570 | + | wecB | BNILDI_04820 | 0.45 | -0.0 |
| 957,570 | + | wecB | BNILDI_04820 | 0.45 | +0.6 |
| 957,571 | - | wecB | BNILDI_04820 | 0.45 | -0.3 |
| 957,874 | + | wecB | BNILDI_04820 | 0.72 | -0.0 |
| 957,874 | + | wecB | BNILDI_04820 | 0.72 | +1.4 |
| 957,874 | + | wecB | BNILDI_04820 | 0.72 | +1.1 |
| 957,875 | - | wecB | BNILDI_04820 | 0.72 | +0.3 |
| 957,878 | + | wecB | BNILDI_04820 | 0.73 | -2.8 |
Or see this region's nucleotide sequence