Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rbsB and rbsK are separated by 125 nucleotides rbsK and rbsR are separated by 3 nucleotides rbsR and hsrA overlap by 35 nucleotides
BNILDI_04655: rbsB - ribose ABC transporter substrate-binding protein RbsB, at 923,256 to 924,146
rbsB
BNILDI_04660: rbsK - ribokinase, at 924,272 to 925,201
rbsK
BNILDI_04665: rbsR - ribose operon transcriptional repressor RbsR, at 925,205 to 926,197
rbsR
BNILDI_04670: hsrA - putative transport protein HsrA, at 926,163 to 927,590
hsrA
Position (kb) 924
925
926 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 923.300 kb on - strand at 923.363 kb on + strand, within rbsB at 923.543 kb on - strand, within rbsB at 923.546 kb on + strand, within rbsB at 923.673 kb on + strand, within rbsB at 923.673 kb on + strand, within rbsB at 923.732 kb on + strand, within rbsB at 923.732 kb on + strand, within rbsB at 923.733 kb on - strand, within rbsB at 923.793 kb on - strand, within rbsB at 923.845 kb on + strand, within rbsB at 923.846 kb on - strand, within rbsB at 923.887 kb on + strand, within rbsB at 924.016 kb on + strand, within rbsB at 924.108 kb on - strand at 924.138 kb on - strand at 924.144 kb on + strand at 924.144 kb on + strand at 924.145 kb on - strand at 924.151 kb on - strand at 924.161 kb on + strand at 924.161 kb on + strand at 924.162 kb on - strand at 924.179 kb on + strand at 924.179 kb on + strand at 924.180 kb on - strand at 924.183 kb on + strand at 924.183 kb on + strand at 924.183 kb on + strand at 924.184 kb on - strand at 924.184 kb on - strand at 924.184 kb on - strand at 924.184 kb on - strand at 924.206 kb on + strand at 924.207 kb on - strand at 924.210 kb on - strand at 924.210 kb on - strand at 924.211 kb on + strand at 924.239 kb on - strand at 924.310 kb on + strand at 924.329 kb on - strand at 924.347 kb on - strand at 924.512 kb on - strand, within rbsK at 924.520 kb on + strand, within rbsK at 924.524 kb on - strand, within rbsK at 924.664 kb on + strand, within rbsK at 924.684 kb on + strand, within rbsK at 924.687 kb on + strand, within rbsK at 924.687 kb on + strand, within rbsK at 924.748 kb on + strand, within rbsK at 924.821 kb on - strand, within rbsK at 924.823 kb on + strand, within rbsK at 924.824 kb on - strand, within rbsK at 924.937 kb on + strand, within rbsK at 924.937 kb on + strand, within rbsK at 924.937 kb on + strand, within rbsK at 924.937 kb on + strand, within rbsK at 924.938 kb on - strand, within rbsK at 925.136 kb on - strand at 925.136 kb on - strand at 925.210 kb on + strand at 925.267 kb on + strand at 925.384 kb on + strand, within rbsR at 925.385 kb on - strand, within rbsR at 925.385 kb on - strand, within rbsR at 925.385 kb on - strand, within rbsR at 925.412 kb on - strand, within rbsR at 925.425 kb on - strand, within rbsR at 925.475 kb on - strand, within rbsR at 925.567 kb on - strand, within rbsR at 925.627 kb on + strand, within rbsR at 925.704 kb on + strand, within rbsR at 925.705 kb on - strand, within rbsR at 925.750 kb on + strand, within rbsR at 925.974 kb on + strand, within rbsR at 925.975 kb on - strand, within rbsR at 925.975 kb on - strand, within rbsR at 925.976 kb on + strand, within rbsR at 925.976 kb on + strand, within rbsR at 925.977 kb on - strand, within rbsR at 926.048 kb on - strand, within rbsR at 926.068 kb on + strand, within rbsR at 926.112 kb on + strand at 926.112 kb on + strand at 926.112 kb on + strand at 926.112 kb on + strand at 926.113 kb on - strand at 926.113 kb on - strand at 926.113 kb on - strand at 926.113 kb on - strand at 926.164 kb on + strand at 926.165 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 923,300 - +0.6 923,363 + rbsB BNILDI_04655 0.12 +0.5 923,543 - rbsB BNILDI_04655 0.32 +0.5 923,546 + rbsB BNILDI_04655 0.33 -0.9 923,673 + rbsB BNILDI_04655 0.47 +0.7 923,673 + rbsB BNILDI_04655 0.47 +0.2 923,732 + rbsB BNILDI_04655 0.53 +0.7 923,732 + rbsB BNILDI_04655 0.53 +0.9 923,733 - rbsB BNILDI_04655 0.54 -0.3 923,793 - rbsB BNILDI_04655 0.60 +0.3 923,845 + rbsB BNILDI_04655 0.66 -0.5 923,846 - rbsB BNILDI_04655 0.66 +0.5 923,887 + rbsB BNILDI_04655 0.71 -0.7 924,016 + rbsB BNILDI_04655 0.85 -0.1 924,108 - -0.7 924,138 - -0.1 924,144 + +1.9 924,144 + +0.2 924,145 - -0.5 924,151 - +0.7 924,161 + +4.5 924,161 + +1.0 924,162 - +1.9 924,179 + +0.6 924,179 + +0.8 924,180 - -0.2 924,183 + +0.4 924,183 + +1.6 924,183 + -0.0 924,184 - -0.4 924,184 - -0.7 924,184 - +0.3 924,184 - -0.7 924,206 + -0.1 924,207 - -0.4 924,210 - -0.3 924,210 - +0.5 924,211 + -0.3 924,239 - +1.0 924,310 + -0.1 924,329 - -0.3 924,347 - -0.2 924,512 - rbsK BNILDI_04660 0.26 +1.9 924,520 + rbsK BNILDI_04660 0.27 +0.7 924,524 - rbsK BNILDI_04660 0.27 -1.4 924,664 + rbsK BNILDI_04660 0.42 -1.0 924,684 + rbsK BNILDI_04660 0.44 -0.1 924,687 + rbsK BNILDI_04660 0.45 -0.1 924,687 + rbsK BNILDI_04660 0.45 -0.4 924,748 + rbsK BNILDI_04660 0.51 +0.8 924,821 - rbsK BNILDI_04660 0.59 -1.2 924,823 + rbsK BNILDI_04660 0.59 -1.1 924,824 - rbsK BNILDI_04660 0.59 -0.2 924,937 + rbsK BNILDI_04660 0.72 +0.5 924,937 + rbsK BNILDI_04660 0.72 -0.4 924,937 + rbsK BNILDI_04660 0.72 -0.3 924,937 + rbsK BNILDI_04660 0.72 -1.1 924,938 - rbsK BNILDI_04660 0.72 -0.8 925,136 - -1.1 925,136 - +0.5 925,210 + -0.6 925,267 + +0.1 925,384 + rbsR BNILDI_04665 0.18 +0.8 925,385 - rbsR BNILDI_04665 0.18 -0.5 925,385 - rbsR BNILDI_04665 0.18 -0.0 925,385 - rbsR BNILDI_04665 0.18 -0.2 925,412 - rbsR BNILDI_04665 0.21 -2.3 925,425 - rbsR BNILDI_04665 0.22 -0.1 925,475 - rbsR BNILDI_04665 0.27 -0.5 925,567 - rbsR BNILDI_04665 0.36 -0.3 925,627 + rbsR BNILDI_04665 0.42 +0.0 925,704 + rbsR BNILDI_04665 0.50 +0.2 925,705 - rbsR BNILDI_04665 0.50 -0.2 925,750 + rbsR BNILDI_04665 0.55 -0.2 925,974 + rbsR BNILDI_04665 0.77 -0.2 925,975 - rbsR BNILDI_04665 0.78 -0.9 925,975 - rbsR BNILDI_04665 0.78 +0.1 925,976 + rbsR BNILDI_04665 0.78 -0.4 925,976 + rbsR BNILDI_04665 0.78 -0.4 925,977 - rbsR BNILDI_04665 0.78 +0.3 926,048 - rbsR BNILDI_04665 0.85 -0.7 926,068 + rbsR BNILDI_04665 0.87 +0.2 926,112 + -0.4 926,112 + -1.4 926,112 + -0.4 926,112 + -0.3 926,113 - +0.4 926,113 - +0.0 926,113 - -1.3 926,113 - -1.5 926,164 + +0.2 926,165 - +0.2
Or see this region's nucleotide sequence