Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnaA and tnaB are separated by 90 nucleotides tnaB and mdtL are separated by 131 nucleotides
BNILDI_04415: tnaA - tryptophanase, at 871,208 to 872,623
tnaA
BNILDI_04420: tnaB - low affinity tryptophan permease TnaB, at 872,714 to 873,961
tnaB
BNILDI_04425: mdtL - multidrug efflux MFS transporter MdtL, at 874,093 to 875,268
mdtL
Position (kb) 872
873
874 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 871.735 kb on - strand, within tnaA at 871.735 kb on - strand, within tnaA at 871.775 kb on + strand, within tnaA at 871.775 kb on + strand, within tnaA at 871.776 kb on - strand, within tnaA at 871.776 kb on - strand, within tnaA at 871.776 kb on - strand, within tnaA at 871.776 kb on - strand, within tnaA at 871.798 kb on + strand, within tnaA at 871.847 kb on + strand, within tnaA at 871.865 kb on + strand, within tnaA at 871.865 kb on + strand, within tnaA at 871.865 kb on + strand, within tnaA at 871.865 kb on + strand, within tnaA at 871.871 kb on - strand, within tnaA at 871.881 kb on + strand, within tnaA at 871.940 kb on + strand, within tnaA at 871.941 kb on - strand, within tnaA at 871.986 kb on - strand, within tnaA at 871.986 kb on - strand, within tnaA at 871.986 kb on - strand, within tnaA at 872.002 kb on + strand, within tnaA at 872.002 kb on + strand, within tnaA at 872.078 kb on + strand, within tnaA at 872.078 kb on + strand, within tnaA at 872.078 kb on + strand, within tnaA at 872.079 kb on - strand, within tnaA at 872.079 kb on - strand, within tnaA at 872.127 kb on - strand, within tnaA at 872.127 kb on - strand, within tnaA at 872.166 kb on + strand, within tnaA at 872.220 kb on + strand, within tnaA at 872.220 kb on + strand, within tnaA at 872.221 kb on - strand, within tnaA at 872.225 kb on + strand, within tnaA at 872.225 kb on + strand, within tnaA at 872.226 kb on - strand, within tnaA at 872.364 kb on - strand, within tnaA at 872.364 kb on - strand, within tnaA at 872.365 kb on + strand, within tnaA at 872.365 kb on + strand, within tnaA at 872.365 kb on + strand, within tnaA at 872.486 kb on + strand at 872.487 kb on - strand at 872.487 kb on - strand at 872.487 kb on - strand at 872.488 kb on + strand at 872.500 kb on + strand at 872.501 kb on - strand at 872.513 kb on - strand at 872.629 kb on - strand at 872.643 kb on - strand at 872.671 kb on - strand at 872.766 kb on + strand at 872.767 kb on - strand at 872.792 kb on - strand at 872.792 kb on - strand at 872.792 kb on - strand at 872.975 kb on - strand, within tnaB at 872.975 kb on - strand, within tnaB at 873.005 kb on + strand, within tnaB at 873.005 kb on + strand, within tnaB at 873.006 kb on - strand, within tnaB at 873.017 kb on + strand, within tnaB at 873.018 kb on - strand, within tnaB at 873.018 kb on - strand, within tnaB at 873.023 kb on + strand, within tnaB at 873.024 kb on - strand, within tnaB at 873.025 kb on + strand, within tnaB at 873.025 kb on + strand, within tnaB at 873.026 kb on - strand, within tnaB at 873.095 kb on - strand, within tnaB at 873.132 kb on + strand, within tnaB at 873.133 kb on - strand, within tnaB at 873.284 kb on + strand, within tnaB at 873.284 kb on + strand, within tnaB at 873.285 kb on - strand, within tnaB at 873.285 kb on - strand, within tnaB at 873.294 kb on - strand, within tnaB at 873.294 kb on - strand, within tnaB at 873.295 kb on + strand, within tnaB at 873.361 kb on + strand, within tnaB at 873.385 kb on + strand, within tnaB at 873.390 kb on + strand, within tnaB at 873.406 kb on - strand, within tnaB at 873.435 kb on - strand, within tnaB at 873.435 kb on - strand, within tnaB at 873.450 kb on - strand, within tnaB at 873.466 kb on + strand, within tnaB at 873.586 kb on + strand, within tnaB at 873.591 kb on + strand, within tnaB at 873.591 kb on + strand, within tnaB at 873.591 kb on + strand, within tnaB at 873.592 kb on - strand, within tnaB at 873.664 kb on + strand, within tnaB at 873.665 kb on - strand, within tnaB at 873.665 kb on - strand, within tnaB at 873.725 kb on + strand, within tnaB at 873.749 kb on - strand, within tnaB at 873.874 kb on + strand at 873.901 kb on + strand at 873.903 kb on + strand at 873.910 kb on - strand at 873.945 kb on + strand at 873.946 kb on - strand at 874.014 kb on + strand at 874.014 kb on + strand at 874.054 kb on + strand at 874.054 kb on + strand at 874.055 kb on - strand at 874.055 kb on - strand at 874.055 kb on - strand at 874.055 kb on - strand at 874.071 kb on + strand at 874.072 kb on - strand at 874.074 kb on + strand at 874.130 kb on + strand at 874.136 kb on - strand at 874.152 kb on + strand at 874.152 kb on + strand at 874.153 kb on - strand at 874.156 kb on + strand at 874.156 kb on + strand at 874.156 kb on + strand at 874.156 kb on + strand at 874.157 kb on - strand at 874.157 kb on - strand at 874.215 kb on + strand, within mdtL at 874.259 kb on + strand, within mdtL at 874.259 kb on + strand, within mdtL at 874.323 kb on - strand, within mdtL at 874.327 kb on - strand, within mdtL at 874.327 kb on - strand, within mdtL at 874.418 kb on - strand, within mdtL at 874.495 kb on - strand, within mdtL at 874.495 kb on - strand, within mdtL at 874.495 kb on - strand, within mdtL at 874.497 kb on + strand, within mdtL at 874.498 kb on - strand, within mdtL at 874.542 kb on + strand, within mdtL at 874.549 kb on - strand, within mdtL at 874.897 kb on - strand, within mdtL at 874.897 kb on - strand, within mdtL at 874.897 kb on - strand, within mdtL at 874.897 kb on - strand, within mdtL at 874.897 kb on - strand, within mdtL
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 871,735 - tnaA BNILDI_04415 0.37 +2.2 871,735 - tnaA BNILDI_04415 0.37 -0.3 871,775 + tnaA BNILDI_04415 0.40 +0.3 871,775 + tnaA BNILDI_04415 0.40 -0.1 871,776 - tnaA BNILDI_04415 0.40 -0.4 871,776 - tnaA BNILDI_04415 0.40 -0.3 871,776 - tnaA BNILDI_04415 0.40 -0.7 871,776 - tnaA BNILDI_04415 0.40 -1.1 871,798 + tnaA BNILDI_04415 0.42 +0.2 871,847 + tnaA BNILDI_04415 0.45 -0.2 871,865 + tnaA BNILDI_04415 0.46 -2.5 871,865 + tnaA BNILDI_04415 0.46 +0.9 871,865 + tnaA BNILDI_04415 0.46 +0.5 871,865 + tnaA BNILDI_04415 0.46 +1.0 871,871 - tnaA BNILDI_04415 0.47 +0.2 871,881 + tnaA BNILDI_04415 0.48 -0.4 871,940 + tnaA BNILDI_04415 0.52 -0.9 871,941 - tnaA BNILDI_04415 0.52 -0.3 871,986 - tnaA BNILDI_04415 0.55 -0.4 871,986 - tnaA BNILDI_04415 0.55 +0.9 871,986 - tnaA BNILDI_04415 0.55 +0.5 872,002 + tnaA BNILDI_04415 0.56 +1.3 872,002 + tnaA BNILDI_04415 0.56 +1.4 872,078 + tnaA BNILDI_04415 0.61 +0.0 872,078 + tnaA BNILDI_04415 0.61 +0.2 872,078 + tnaA BNILDI_04415 0.61 +0.9 872,079 - tnaA BNILDI_04415 0.62 -0.0 872,079 - tnaA BNILDI_04415 0.62 -0.0 872,127 - tnaA BNILDI_04415 0.65 +0.4 872,127 - tnaA BNILDI_04415 0.65 +1.3 872,166 + tnaA BNILDI_04415 0.68 -0.4 872,220 + tnaA BNILDI_04415 0.71 +1.0 872,220 + tnaA BNILDI_04415 0.71 +0.3 872,221 - tnaA BNILDI_04415 0.72 -0.0 872,225 + tnaA BNILDI_04415 0.72 -0.1 872,225 + tnaA BNILDI_04415 0.72 -0.5 872,226 - tnaA BNILDI_04415 0.72 +0.0 872,364 - tnaA BNILDI_04415 0.82 +0.1 872,364 - tnaA BNILDI_04415 0.82 -0.2 872,365 + tnaA BNILDI_04415 0.82 +0.7 872,365 + tnaA BNILDI_04415 0.82 +0.9 872,365 + tnaA BNILDI_04415 0.82 +0.1 872,486 + +0.2 872,487 - -0.8 872,487 - -0.5 872,487 - -0.1 872,488 + +1.1 872,500 + -0.3 872,501 - -0.3 872,513 - -0.1 872,629 - +1.1 872,643 - +0.5 872,671 - +2.3 872,766 + -0.8 872,767 - +0.3 872,792 - -0.6 872,792 - +0.0 872,792 - +0.7 872,975 - tnaB BNILDI_04420 0.21 +0.3 872,975 - tnaB BNILDI_04420 0.21 -0.8 873,005 + tnaB BNILDI_04420 0.23 -1.9 873,005 + tnaB BNILDI_04420 0.23 -0.4 873,006 - tnaB BNILDI_04420 0.23 +0.5 873,017 + tnaB BNILDI_04420 0.24 +0.9 873,018 - tnaB BNILDI_04420 0.24 +0.3 873,018 - tnaB BNILDI_04420 0.24 +0.3 873,023 + tnaB BNILDI_04420 0.25 -0.1 873,024 - tnaB BNILDI_04420 0.25 +0.2 873,025 + tnaB BNILDI_04420 0.25 +0.6 873,025 + tnaB BNILDI_04420 0.25 +0.3 873,026 - tnaB BNILDI_04420 0.25 +0.9 873,095 - tnaB BNILDI_04420 0.31 +0.5 873,132 + tnaB BNILDI_04420 0.33 -1.3 873,133 - tnaB BNILDI_04420 0.34 -0.1 873,284 + tnaB BNILDI_04420 0.46 -0.0 873,284 + tnaB BNILDI_04420 0.46 -0.6 873,285 - tnaB BNILDI_04420 0.46 +1.9 873,285 - tnaB BNILDI_04420 0.46 -0.4 873,294 - tnaB BNILDI_04420 0.46 -1.1 873,294 - tnaB BNILDI_04420 0.46 +1.9 873,295 + tnaB BNILDI_04420 0.47 -0.1 873,361 + tnaB BNILDI_04420 0.52 -0.4 873,385 + tnaB BNILDI_04420 0.54 +0.5 873,390 + tnaB BNILDI_04420 0.54 -0.3 873,406 - tnaB BNILDI_04420 0.55 -0.1 873,435 - tnaB BNILDI_04420 0.58 -0.1 873,435 - tnaB BNILDI_04420 0.58 -0.8 873,450 - tnaB BNILDI_04420 0.59 -0.1 873,466 + tnaB BNILDI_04420 0.60 +0.7 873,586 + tnaB BNILDI_04420 0.70 -0.3 873,591 + tnaB BNILDI_04420 0.70 -0.1 873,591 + tnaB BNILDI_04420 0.70 +0.4 873,591 + tnaB BNILDI_04420 0.70 -0.9 873,592 - tnaB BNILDI_04420 0.70 -1.4 873,664 + tnaB BNILDI_04420 0.76 -0.1 873,665 - tnaB BNILDI_04420 0.76 -1.9 873,665 - tnaB BNILDI_04420 0.76 -0.5 873,725 + tnaB BNILDI_04420 0.81 +0.9 873,749 - tnaB BNILDI_04420 0.83 +2.9 873,874 + +0.6 873,901 + -0.3 873,903 + +0.1 873,910 - +0.8 873,945 + +1.2 873,946 - -1.3 874,014 + -0.0 874,014 + +0.2 874,054 + +0.3 874,054 + -0.8 874,055 - -2.3 874,055 - -0.0 874,055 - +1.0 874,055 - -0.4 874,071 + +2.2 874,072 - -0.6 874,074 + -0.1 874,130 + -0.0 874,136 - +0.8 874,152 + +1.3 874,152 + -0.5 874,153 - -0.5 874,156 + -1.5 874,156 + +0.6 874,156 + +0.1 874,156 + -0.2 874,157 - -0.1 874,157 - +0.5 874,215 + mdtL BNILDI_04425 0.10 +0.6 874,259 + mdtL BNILDI_04425 0.14 -0.1 874,259 + mdtL BNILDI_04425 0.14 -0.1 874,323 - mdtL BNILDI_04425 0.20 -0.2 874,327 - mdtL BNILDI_04425 0.20 +0.4 874,327 - mdtL BNILDI_04425 0.20 -0.6 874,418 - mdtL BNILDI_04425 0.28 -0.7 874,495 - mdtL BNILDI_04425 0.34 -1.2 874,495 - mdtL BNILDI_04425 0.34 -0.4 874,495 - mdtL BNILDI_04425 0.34 +0.3 874,497 + mdtL BNILDI_04425 0.34 -0.9 874,498 - mdtL BNILDI_04425 0.34 +0.9 874,542 + mdtL BNILDI_04425 0.38 +0.5 874,549 - mdtL BNILDI_04425 0.39 +1.1 874,897 - mdtL BNILDI_04425 0.68 +1.2 874,897 - mdtL BNILDI_04425 0.68 -0.1 874,897 - mdtL BNILDI_04425 0.68 +0.0 874,897 - mdtL BNILDI_04425 0.68 +0.2 874,897 - mdtL BNILDI_04425 0.68 +0.8
Or see this region's nucleotide sequence