Strain Fitness in Escherichia coli ECRC62 around BNILDI_04175

Experiment: JK38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntadeD and uhpT_E350Q are separated by 44 nucleotidesuhpT_E350Q and uhpC are separated by 137 nucleotides BNILDI_04170: adeD - adenine deaminase, at 826,302 to 828,068 adeD BNILDI_04175: uhpT_E350Q - hexose phosphate transporter UhpT, at 828,113 to 829,504 _E350Q BNILDI_04180: uhpC - MFS transporter family glucose-6-phosphate receptor UhpC, at 829,642 to 830,961 uhpC Position (kb) 828 829 830Strain fitness (log2 ratio) -2 -1 0 1 2 3at 827.302 kb on + strand, within adeDat 827.372 kb on - strand, within adeDat 827.452 kb on - strand, within adeDat 827.618 kb on + strand, within adeDat 827.729 kb on + strand, within adeDat 827.729 kb on + strand, within adeDat 827.733 kb on - strand, within adeDat 827.815 kb on + strand, within adeDat 828.019 kb on + strandat 828.108 kb on + strandat 828.109 kb on - strandat 828.196 kb on + strandat 828.196 kb on + strandat 828.290 kb on + strand, within uhpT_E350Qat 828.291 kb on - strand, within uhpT_E350Qat 828.291 kb on - strand, within uhpT_E350Qat 828.334 kb on + strand, within uhpT_E350Qat 828.335 kb on - strand, within uhpT_E350Qat 828.335 kb on - strand, within uhpT_E350Qat 828.369 kb on - strand, within uhpT_E350Qat 828.447 kb on + strand, within uhpT_E350Qat 828.447 kb on + strand, within uhpT_E350Qat 828.447 kb on + strand, within uhpT_E350Qat 828.447 kb on + strand, within uhpT_E350Qat 828.448 kb on - strand, within uhpT_E350Qat 828.451 kb on + strand, within uhpT_E350Qat 828.451 kb on + strand, within uhpT_E350Qat 828.451 kb on + strand, within uhpT_E350Qat 828.451 kb on + strand, within uhpT_E350Qat 828.451 kb on + strand, within uhpT_E350Qat 828.452 kb on - strand, within uhpT_E350Qat 828.452 kb on - strand, within uhpT_E350Qat 828.452 kb on - strand, within uhpT_E350Qat 828.453 kb on + strand, within uhpT_E350Qat 828.453 kb on + strand, within uhpT_E350Qat 828.453 kb on + strand, within uhpT_E350Qat 828.453 kb on + strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.454 kb on - strand, within uhpT_E350Qat 828.571 kb on + strand, within uhpT_E350Qat 828.654 kb on - strand, within uhpT_E350Qat 828.679 kb on + strand, within uhpT_E350Qat 828.680 kb on - strand, within uhpT_E350Qat 828.680 kb on - strand, within uhpT_E350Qat 828.680 kb on - strand, within uhpT_E350Qat 828.680 kb on - strand, within uhpT_E350Qat 828.683 kb on + strand, within uhpT_E350Qat 828.690 kb on + strand, within uhpT_E350Qat 828.690 kb on + strand, within uhpT_E350Qat 828.744 kb on + strand, within uhpT_E350Qat 828.744 kb on + strand, within uhpT_E350Qat 828.745 kb on - strand, within uhpT_E350Qat 828.779 kb on - strand, within uhpT_E350Qat 828.920 kb on - strand, within uhpT_E350Qat 829.040 kb on - strand, within uhpT_E350Qat 829.180 kb on + strand, within uhpT_E350Qat 829.181 kb on - strand, within uhpT_E350Qat 829.181 kb on - strand, within uhpT_E350Qat 829.181 kb on - strand, within uhpT_E350Qat 829.181 kb on - strand, within uhpT_E350Qat 829.273 kb on - strand, within uhpT_E350Qat 829.576 kb on - strandat 829.606 kb on - strandat 829.682 kb on - strandat 829.753 kb on + strandat 829.931 kb on + strand, within uhpCat 829.931 kb on + strand, within uhpCat 829.931 kb on + strand, within uhpCat 829.932 kb on - strand, within uhpCat 830.061 kb on + strand, within uhpCat 830.133 kb on + strand, within uhpCat 830.134 kb on - strand, within uhpCat 830.135 kb on + strand, within uhpCat 830.136 kb on - strand, within uhpCat 830.136 kb on - strand, within uhpCat 830.136 kb on - strand, within uhpCat 830.174 kb on + strand, within uhpCat 830.175 kb on - strand, within uhpCat 830.175 kb on - strand, within uhpCat 830.175 kb on - strand, within uhpCat 830.175 kb on - strand, within uhpCat 830.175 kb on - strand, within uhpCat 830.186 kb on + strand, within uhpCat 830.187 kb on - strand, within uhpCat 830.208 kb on + strand, within uhpCat 830.209 kb on - strand, within uhpCat 830.211 kb on - strand, within uhpCat 830.211 kb on - strand, within uhpCat 830.228 kb on + strand, within uhpCat 830.228 kb on + strand, within uhpCat 830.228 kb on + strand, within uhpCat 830.228 kb on + strand, within uhpCat 830.228 kb on + strand, within uhpCat 830.229 kb on - strand, within uhpCat 830.229 kb on - strand, within uhpCat 830.229 kb on - strand, within uhpCat 830.229 kb on - strand, within uhpCat 830.327 kb on - strand, within uhpCat 830.385 kb on + strand, within uhpCat 830.385 kb on + strand, within uhpCat 830.386 kb on - strand, within uhpCat 830.386 kb on - strand, within uhpC

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Per-strain Table

Position Strand Gene LocusTag Fraction JK38
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827,302 + adeD BNILDI_04170 0.57 -0.6
827,372 - adeD BNILDI_04170 0.61 +0.6
827,452 - adeD BNILDI_04170 0.65 +1.9
827,618 + adeD BNILDI_04170 0.74 +0.1
827,729 + adeD BNILDI_04170 0.81 -0.0
827,729 + adeD BNILDI_04170 0.81 -0.1
827,733 - adeD BNILDI_04170 0.81 -0.1
827,815 + adeD BNILDI_04170 0.86 +1.1
828,019 + -0.4
828,108 + +0.9
828,109 - +0.2
828,196 + +0.5
828,196 + -0.3
828,290 + uhpT_E350Q BNILDI_04175 0.13 +0.1
828,291 - uhpT_E350Q BNILDI_04175 0.13 -0.5
828,291 - uhpT_E350Q BNILDI_04175 0.13 +0.2
828,334 + uhpT_E350Q BNILDI_04175 0.16 +0.1
828,335 - uhpT_E350Q BNILDI_04175 0.16 -0.1
828,335 - uhpT_E350Q BNILDI_04175 0.16 +1.9
828,369 - uhpT_E350Q BNILDI_04175 0.18 -1.7
828,447 + uhpT_E350Q BNILDI_04175 0.24 -0.1
828,447 + uhpT_E350Q BNILDI_04175 0.24 +1.9
828,447 + uhpT_E350Q BNILDI_04175 0.24 +0.8
828,447 + uhpT_E350Q BNILDI_04175 0.24 -1.7
828,448 - uhpT_E350Q BNILDI_04175 0.24 -0.1
828,451 + uhpT_E350Q BNILDI_04175 0.24 +0.3
828,451 + uhpT_E350Q BNILDI_04175 0.24 +1.1
828,451 + uhpT_E350Q BNILDI_04175 0.24 +0.4
828,451 + uhpT_E350Q BNILDI_04175 0.24 +0.2
828,451 + uhpT_E350Q BNILDI_04175 0.24 +2.9
828,452 - uhpT_E350Q BNILDI_04175 0.24 +1.9
828,452 - uhpT_E350Q BNILDI_04175 0.24 +0.4
828,452 - uhpT_E350Q BNILDI_04175 0.24 -0.1
828,453 + uhpT_E350Q BNILDI_04175 0.24 -1.8
828,453 + uhpT_E350Q BNILDI_04175 0.24 +1.9
828,453 + uhpT_E350Q BNILDI_04175 0.24 -0.5
828,453 + uhpT_E350Q BNILDI_04175 0.24 -0.7
828,454 - uhpT_E350Q BNILDI_04175 0.24 +0.9
828,454 - uhpT_E350Q BNILDI_04175 0.24 +1.9
828,454 - uhpT_E350Q BNILDI_04175 0.24 +0.7
828,454 - uhpT_E350Q BNILDI_04175 0.24 -0.6
828,454 - uhpT_E350Q BNILDI_04175 0.24 -0.0
828,454 - uhpT_E350Q BNILDI_04175 0.24 +1.0
828,571 + uhpT_E350Q BNILDI_04175 0.33 -1.1
828,654 - uhpT_E350Q BNILDI_04175 0.39 +0.0
828,679 + uhpT_E350Q BNILDI_04175 0.41 +0.9
828,680 - uhpT_E350Q BNILDI_04175 0.41 -0.1
828,680 - uhpT_E350Q BNILDI_04175 0.41 +0.7
828,680 - uhpT_E350Q BNILDI_04175 0.41 -1.4
828,680 - uhpT_E350Q BNILDI_04175 0.41 +0.1
828,683 + uhpT_E350Q BNILDI_04175 0.41 -0.4
828,690 + uhpT_E350Q BNILDI_04175 0.41 +0.5
828,690 + uhpT_E350Q BNILDI_04175 0.41 +2.9
828,744 + uhpT_E350Q BNILDI_04175 0.45 -0.1
828,744 + uhpT_E350Q BNILDI_04175 0.45 -0.4
828,745 - uhpT_E350Q BNILDI_04175 0.45 +0.5
828,779 - uhpT_E350Q BNILDI_04175 0.48 +0.4
828,920 - uhpT_E350Q BNILDI_04175 0.58 -0.8
829,040 - uhpT_E350Q BNILDI_04175 0.67 +0.8
829,180 + uhpT_E350Q BNILDI_04175 0.77 +0.3
829,181 - uhpT_E350Q BNILDI_04175 0.77 -0.5
829,181 - uhpT_E350Q BNILDI_04175 0.77 -0.7
829,181 - uhpT_E350Q BNILDI_04175 0.77 +0.8
829,181 - uhpT_E350Q BNILDI_04175 0.77 -0.5
829,273 - uhpT_E350Q BNILDI_04175 0.83 -0.5
829,576 - -0.1
829,606 - -0.2
829,682 - -0.3
829,753 + -0.2
829,931 + uhpC BNILDI_04180 0.22 +0.7
829,931 + uhpC BNILDI_04180 0.22 -0.7
829,931 + uhpC BNILDI_04180 0.22 +0.1
829,932 - uhpC BNILDI_04180 0.22 +0.7
830,061 + uhpC BNILDI_04180 0.32 -0.4
830,133 + uhpC BNILDI_04180 0.37 +0.1
830,134 - uhpC BNILDI_04180 0.37 +1.0
830,135 + uhpC BNILDI_04180 0.37 +0.9
830,136 - uhpC BNILDI_04180 0.37 +0.0
830,136 - uhpC BNILDI_04180 0.37 +0.6
830,136 - uhpC BNILDI_04180 0.37 -0.0
830,174 + uhpC BNILDI_04180 0.40 +0.3
830,175 - uhpC BNILDI_04180 0.40 +0.3
830,175 - uhpC BNILDI_04180 0.40 -1.8
830,175 - uhpC BNILDI_04180 0.40 -0.4
830,175 - uhpC BNILDI_04180 0.40 +1.1
830,175 - uhpC BNILDI_04180 0.40 +0.8
830,186 + uhpC BNILDI_04180 0.41 -1.4
830,187 - uhpC BNILDI_04180 0.41 -0.5
830,208 + uhpC BNILDI_04180 0.43 -0.1
830,209 - uhpC BNILDI_04180 0.43 +0.3
830,211 - uhpC BNILDI_04180 0.43 +1.1
830,211 - uhpC BNILDI_04180 0.43 -2.3
830,228 + uhpC BNILDI_04180 0.44 +1.1
830,228 + uhpC BNILDI_04180 0.44 +0.0
830,228 + uhpC BNILDI_04180 0.44 +0.1
830,228 + uhpC BNILDI_04180 0.44 -0.7
830,228 + uhpC BNILDI_04180 0.44 -0.2
830,229 - uhpC BNILDI_04180 0.44 +1.5
830,229 - uhpC BNILDI_04180 0.44 -0.2
830,229 - uhpC BNILDI_04180 0.44 +0.1
830,229 - uhpC BNILDI_04180 0.44 +0.0
830,327 - uhpC BNILDI_04180 0.52 +1.2
830,385 + uhpC BNILDI_04180 0.56 -0.1
830,385 + uhpC BNILDI_04180 0.56 +1.1
830,386 - uhpC BNILDI_04180 0.56 -0.4
830,386 - uhpC BNILDI_04180 0.56 -0.1

Or see this region's nucleotide sequence