Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhhW and yhhX are separated by 122 nucleotides yhhX and yhhY are separated by 332 nucleotides
BNILDI_02875: yhhW - quercetin 2,3-dioxygenase, at 558,850 to 559,545
yhhW
BNILDI_02880: yhhX - oxidoreductase, at 559,668 to 560,705
yhhX
BNILDI_02890: yhhY - N-acetyltransferase, at 561,038 to 561,526
yhhY
Position (kb) 559
560
561 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 558.718 kb on + strand at 558.718 kb on + strand at 558.719 kb on - strand at 558.719 kb on - strand at 558.719 kb on - strand at 558.723 kb on - strand at 558.723 kb on - strand at 558.725 kb on - strand at 558.725 kb on - strand at 559.058 kb on + strand, within yhhW at 559.303 kb on - strand, within yhhW at 559.303 kb on - strand, within yhhW at 559.347 kb on - strand, within yhhW at 559.347 kb on - strand, within yhhW at 559.363 kb on - strand, within yhhW at 559.457 kb on + strand, within yhhW at 559.538 kb on + strand at 559.538 kb on + strand at 559.539 kb on - strand at 559.549 kb on + strand at 559.580 kb on - strand at 559.580 kb on - strand at 559.580 kb on - strand at 559.607 kb on + strand at 559.674 kb on - strand at 559.683 kb on + strand at 559.683 kb on + strand at 559.684 kb on - strand at 559.760 kb on - strand at 559.760 kb on - strand at 559.790 kb on - strand, within yhhX at 559.790 kb on - strand, within yhhX at 559.790 kb on - strand, within yhhX at 559.870 kb on + strand, within yhhX at 559.871 kb on - strand, within yhhX at 559.926 kb on - strand, within yhhX at 559.963 kb on + strand, within yhhX at 559.963 kb on + strand, within yhhX at 559.967 kb on + strand, within yhhX at 559.967 kb on + strand, within yhhX at 559.968 kb on - strand, within yhhX at 559.968 kb on - strand, within yhhX at 559.968 kb on - strand, within yhhX at 559.998 kb on - strand, within yhhX at 560.103 kb on - strand, within yhhX at 560.122 kb on + strand, within yhhX at 560.122 kb on + strand, within yhhX at 560.123 kb on - strand, within yhhX at 560.156 kb on + strand, within yhhX at 560.171 kb on + strand, within yhhX at 560.188 kb on + strand, within yhhX at 560.523 kb on + strand, within yhhX at 560.524 kb on - strand, within yhhX at 560.524 kb on - strand, within yhhX at 560.526 kb on + strand, within yhhX at 560.527 kb on - strand, within yhhX at 560.527 kb on - strand, within yhhX at 560.563 kb on + strand, within yhhX at 560.636 kb on + strand at 560.636 kb on + strand at 560.640 kb on + strand at 560.640 kb on + strand at 560.641 kb on - strand at 560.641 kb on - strand at 560.730 kb on - strand at 560.730 kb on - strand at 560.848 kb on + strand at 560.852 kb on + strand at 560.853 kb on - strand at 561.048 kb on + strand at 561.055 kb on - strand at 561.055 kb on - strand at 561.078 kb on - strand at 561.116 kb on + strand, within yhhY at 561.117 kb on - strand, within yhhY at 561.117 kb on - strand, within yhhY at 561.117 kb on - strand, within yhhY at 561.129 kb on + strand, within yhhY at 561.130 kb on - strand, within yhhY at 561.130 kb on - strand, within yhhY at 561.130 kb on - strand, within yhhY at 561.154 kb on + strand, within yhhY at 561.209 kb on - strand, within yhhY at 561.391 kb on - strand, within yhhY at 561.422 kb on - strand, within yhhY at 561.430 kb on + strand, within yhhY at 561.504 kb on - strand at 561.524 kb on + strand at 561.525 kb on - strand at 561.577 kb on + strand at 561.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 558,718 + +1.8 558,718 + +0.0 558,719 - -0.3 558,719 - +0.2 558,719 - -1.1 558,723 - -0.1 558,723 - -1.2 558,725 - +1.0 558,725 - +0.8 559,058 + yhhW BNILDI_02875 0.30 +0.1 559,303 - yhhW BNILDI_02875 0.65 +0.3 559,303 - yhhW BNILDI_02875 0.65 -1.6 559,347 - yhhW BNILDI_02875 0.71 +0.0 559,347 - yhhW BNILDI_02875 0.71 +1.3 559,363 - yhhW BNILDI_02875 0.74 -0.1 559,457 + yhhW BNILDI_02875 0.87 -1.4 559,538 + +0.3 559,538 + -2.0 559,539 - -0.3 559,549 + -0.4 559,580 - +0.2 559,580 - -0.4 559,580 - +0.8 559,607 + -0.0 559,674 - -1.1 559,683 + -1.8 559,683 + +0.2 559,684 - +0.1 559,760 - +0.7 559,760 - +0.2 559,790 - yhhX BNILDI_02880 0.12 -0.3 559,790 - yhhX BNILDI_02880 0.12 +0.3 559,790 - yhhX BNILDI_02880 0.12 +1.1 559,870 + yhhX BNILDI_02880 0.19 -0.5 559,871 - yhhX BNILDI_02880 0.20 -0.3 559,926 - yhhX BNILDI_02880 0.25 -0.0 559,963 + yhhX BNILDI_02880 0.28 +0.2 559,963 + yhhX BNILDI_02880 0.28 -0.5 559,967 + yhhX BNILDI_02880 0.29 +0.1 559,967 + yhhX BNILDI_02880 0.29 -0.6 559,968 - yhhX BNILDI_02880 0.29 +0.6 559,968 - yhhX BNILDI_02880 0.29 -0.1 559,968 - yhhX BNILDI_02880 0.29 +0.4 559,998 - yhhX BNILDI_02880 0.32 +0.2 560,103 - yhhX BNILDI_02880 0.42 -0.6 560,122 + yhhX BNILDI_02880 0.44 -0.2 560,122 + yhhX BNILDI_02880 0.44 +0.2 560,123 - yhhX BNILDI_02880 0.44 +0.8 560,156 + yhhX BNILDI_02880 0.47 -1.7 560,171 + yhhX BNILDI_02880 0.48 +0.5 560,188 + yhhX BNILDI_02880 0.50 +0.8 560,523 + yhhX BNILDI_02880 0.82 -0.8 560,524 - yhhX BNILDI_02880 0.82 +2.8 560,524 - yhhX BNILDI_02880 0.82 -0.1 560,526 + yhhX BNILDI_02880 0.83 -0.8 560,527 - yhhX BNILDI_02880 0.83 +1.5 560,527 - yhhX BNILDI_02880 0.83 +1.0 560,563 + yhhX BNILDI_02880 0.86 -0.1 560,636 + +0.0 560,636 + +0.2 560,640 + -0.9 560,640 + -1.5 560,641 - +0.2 560,641 - -0.2 560,730 - -0.4 560,730 - -0.2 560,848 + +0.0 560,852 + -0.9 560,853 - -0.2 561,048 + +0.3 561,055 - -0.5 561,055 - +0.8 561,078 - +0.1 561,116 + yhhY BNILDI_02890 0.16 +1.5 561,117 - yhhY BNILDI_02890 0.16 +0.7 561,117 - yhhY BNILDI_02890 0.16 +0.0 561,117 - yhhY BNILDI_02890 0.16 +1.1 561,129 + yhhY BNILDI_02890 0.19 -0.1 561,130 - yhhY BNILDI_02890 0.19 -1.8 561,130 - yhhY BNILDI_02890 0.19 -0.6 561,130 - yhhY BNILDI_02890 0.19 -0.4 561,154 + yhhY BNILDI_02890 0.24 +0.4 561,209 - yhhY BNILDI_02890 0.35 -0.9 561,391 - yhhY BNILDI_02890 0.72 -0.3 561,422 - yhhY BNILDI_02890 0.79 -0.1 561,430 + yhhY BNILDI_02890 0.80 +0.8 561,504 - +0.4 561,524 + +0.5 561,525 - +0.1 561,577 + +1.2 561,578 - +0.2
Or see this region's nucleotide sequence