Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glpD and BNILDI_02800 are separated by 53 nucleotides BNILDI_02800 and BNILDI_02805 are separated by 2 nucleotides BNILDI_02805 and BNILDI_02810 are separated by 2 nucleotides
BNILDI_02795: glpD - glycerol-3-phosphate dehydrogenase, at 538,739 to 540,244
glpD
BNILDI_02800: BNILDI_02800 - Ybl142, at 540,298 to 540,903
_02800
BNILDI_02805: BNILDI_02805 - hypothetical protein, at 540,906 to 541,673
_02805
BNILDI_02810: BNILDI_02810 - YjgN_1 protein, at 541,676 to 542,386
_02810
Position (kb) 540
541 Strain fitness (log2 ratio) -1
0
1
2 at 539.852 kb on + strand, within glpD at 539.856 kb on - strand, within glpD at 539.988 kb on - strand, within glpD at 540.095 kb on + strand at 540.096 kb on - strand at 540.212 kb on + strand at 540.212 kb on + strand at 540.215 kb on - strand at 540.304 kb on + strand at 540.305 kb on - strand at 540.346 kb on + strand at 540.346 kb on + strand at 540.347 kb on - strand at 540.411 kb on - strand, within BNILDI_02800 at 540.531 kb on + strand, within BNILDI_02800 at 540.948 kb on + strand at 541.155 kb on + strand, within BNILDI_02805 at 541.200 kb on - strand, within BNILDI_02805 at 541.517 kb on - strand, within BNILDI_02805 at 541.539 kb on - strand, within BNILDI_02805 at 541.539 kb on - strand, within BNILDI_02805 at 541.645 kb on - strand at 541.673 kb on + strand at 541.678 kb on - strand at 541.789 kb on + strand, within BNILDI_02810 at 541.790 kb on - strand, within BNILDI_02810 at 541.834 kb on - strand, within BNILDI_02810
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 539,852 + glpD BNILDI_02795 0.74 -0.5 539,856 - glpD BNILDI_02795 0.74 -0.6 539,988 - glpD BNILDI_02795 0.83 +0.2 540,095 + -0.6 540,096 - +0.0 540,212 + +0.8 540,212 + +1.8 540,215 - -0.4 540,304 + -0.2 540,305 - +0.4 540,346 + -0.5 540,346 + -0.8 540,347 - +0.6 540,411 - BNILDI_02800 0.19 -0.8 540,531 + BNILDI_02800 0.38 +0.0 540,948 + -0.1 541,155 + BNILDI_02805 0.32 -1.1 541,200 - BNILDI_02805 0.38 -0.5 541,517 - BNILDI_02805 0.80 +0.3 541,539 - BNILDI_02805 0.82 -0.9 541,539 - BNILDI_02805 0.82 -0.7 541,645 - +1.2 541,673 + +2.4 541,678 - +1.4 541,789 + BNILDI_02810 0.16 +0.2 541,790 - BNILDI_02810 0.16 -0.3 541,834 - BNILDI_02810 0.22 -0.0
Or see this region's nucleotide sequence