Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ompR_G63V and greB are separated by 227 nucleotides greB and yhgF are separated by 96 nucleotides yhgF and feoA are separated by 437 nucleotides feoA and feoB are separated by 16 nucleotides
BNILDI_02695: ompR_G63V - two-component system response regulator OmpR, at 512,674 to 513,393
_G63V
BNILDI_02700: greB - transcription elongation factor GreB, at 513,621 to 514,097
greB
BNILDI_02705: yhgF - Protein YhgF, at 514,194 to 516,515
yhgF
BNILDI_02710: feoA - ferrous iron transporter A, at 516,953 to 517,180
feoA
BNILDI_02715: feoB - Fe(2+) transporter permease subunit FeoB, at 517,197 to 519,518
feoB
Position (kb) 514
515
516
517 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 513.220 kb on + strand, within ompR_G63V at 513.220 kb on + strand, within ompR_G63V at 513.220 kb on + strand, within ompR_G63V at 513.221 kb on - strand, within ompR_G63V at 513.226 kb on + strand, within ompR_G63V at 513.226 kb on + strand, within ompR_G63V at 513.227 kb on - strand, within ompR_G63V at 513.240 kb on + strand, within ompR_G63V at 513.240 kb on + strand, within ompR_G63V at 513.240 kb on + strand, within ompR_G63V at 513.240 kb on + strand, within ompR_G63V at 513.241 kb on - strand, within ompR_G63V at 513.241 kb on - strand, within ompR_G63V at 513.380 kb on + strand at 513.381 kb on - strand at 513.381 kb on - strand at 513.427 kb on - strand at 513.427 kb on - strand at 513.427 kb on - strand at 513.434 kb on + strand at 513.435 kb on - strand at 513.466 kb on + strand at 513.521 kb on + strand at 513.521 kb on + strand at 513.522 kb on - strand at 513.575 kb on + strand at 513.674 kb on + strand, within greB at 513.678 kb on + strand, within greB at 513.678 kb on + strand, within greB at 513.678 kb on + strand, within greB at 513.679 kb on - strand, within greB at 513.679 kb on - strand, within greB at 513.679 kb on - strand, within greB at 513.768 kb on + strand, within greB at 513.768 kb on + strand, within greB at 513.769 kb on - strand, within greB at 513.769 kb on - strand, within greB at 513.769 kb on - strand, within greB at 513.770 kb on + strand, within greB at 513.770 kb on + strand, within greB at 513.773 kb on + strand, within greB at 513.774 kb on - strand, within greB at 513.810 kb on + strand, within greB at 513.818 kb on + strand, within greB at 513.963 kb on - strand, within greB at 513.969 kb on + strand, within greB at 513.969 kb on + strand, within greB at 513.969 kb on + strand, within greB at 514.040 kb on + strand, within greB at 514.066 kb on - strand at 514.066 kb on - strand at 514.152 kb on - strand at 514.152 kb on - strand at 514.155 kb on + strand at 514.155 kb on + strand at 514.156 kb on - strand at 514.221 kb on - strand at 514.221 kb on - strand at 514.378 kb on - strand at 514.503 kb on + strand, within yhgF at 514.503 kb on + strand, within yhgF at 514.512 kb on + strand, within yhgF at 514.626 kb on + strand, within yhgF at 514.626 kb on + strand, within yhgF at 514.627 kb on - strand, within yhgF at 514.683 kb on + strand, within yhgF at 514.684 kb on - strand, within yhgF at 514.740 kb on + strand, within yhgF at 514.740 kb on + strand, within yhgF at 514.894 kb on + strand, within yhgF at 514.951 kb on - strand, within yhgF at 515.010 kb on - strand, within yhgF at 515.327 kb on + strand, within yhgF at 515.461 kb on - strand, within yhgF at 515.543 kb on - strand, within yhgF at 515.594 kb on - strand, within yhgF at 515.601 kb on + strand, within yhgF at 515.601 kb on + strand, within yhgF at 515.653 kb on + strand, within yhgF at 515.653 kb on + strand, within yhgF at 515.653 kb on + strand, within yhgF at 516.009 kb on - strand, within yhgF at 516.037 kb on + strand, within yhgF at 516.037 kb on + strand, within yhgF at 516.037 kb on + strand, within yhgF at 516.037 kb on + strand, within yhgF at 516.038 kb on - strand, within yhgF at 516.038 kb on - strand, within yhgF at 516.093 kb on - strand, within yhgF at 516.329 kb on + strand at 516.330 kb on - strand at 516.330 kb on - strand at 516.335 kb on + strand at 516.591 kb on - strand at 516.645 kb on + strand at 516.645 kb on + strand at 516.646 kb on - strand at 516.646 kb on - strand at 516.729 kb on + strand at 516.777 kb on + strand at 516.778 kb on - strand at 516.918 kb on + strand at 516.918 kb on + strand at 516.919 kb on - strand at 516.919 kb on - strand at 516.919 kb on - strand at 516.919 kb on - strand at 516.919 kb on - strand at 516.919 kb on - strand at 516.944 kb on + strand at 516.944 kb on + strand at 516.944 kb on + strand at 516.944 kb on + strand at 516.944 kb on + strand at 516.960 kb on - strand at 516.960 kb on - strand at 516.970 kb on + strand at 517.047 kb on + strand, within feoA at 517.047 kb on + strand, within feoA at 517.064 kb on - strand, within feoA at 517.155 kb on + strand, within feoA at 517.213 kb on + strand at 517.213 kb on + strand at 517.219 kb on + strand at 517.219 kb on + strand at 517.252 kb on + strand at 517.252 kb on + strand at 517.256 kb on + strand at 517.285 kb on + strand at 517.285 kb on + strand at 517.286 kb on - strand at 517.289 kb on + strand at 517.289 kb on + strand at 517.289 kb on + strand at 517.290 kb on - strand at 517.317 kb on - strand at 517.377 kb on + strand at 517.378 kb on - strand at 517.513 kb on + strand, within feoB at 517.513 kb on + strand, within feoB
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 513,220 + ompR_G63V BNILDI_02695 0.76 -0.8 513,220 + ompR_G63V BNILDI_02695 0.76 -0.2 513,220 + ompR_G63V BNILDI_02695 0.76 +0.7 513,221 - ompR_G63V BNILDI_02695 0.76 +0.7 513,226 + ompR_G63V BNILDI_02695 0.77 +0.3 513,226 + ompR_G63V BNILDI_02695 0.77 +0.5 513,227 - ompR_G63V BNILDI_02695 0.77 -0.8 513,240 + ompR_G63V BNILDI_02695 0.79 -1.0 513,240 + ompR_G63V BNILDI_02695 0.79 -0.4 513,240 + ompR_G63V BNILDI_02695 0.79 -0.8 513,240 + ompR_G63V BNILDI_02695 0.79 -0.5 513,241 - ompR_G63V BNILDI_02695 0.79 +0.2 513,241 - ompR_G63V BNILDI_02695 0.79 -0.1 513,380 + +0.1 513,381 - -1.5 513,381 - +1.1 513,427 - -0.1 513,427 - -0.9 513,427 - +0.4 513,434 + +1.5 513,435 - -0.0 513,466 + +0.1 513,521 + -0.0 513,521 + -0.0 513,522 - +0.1 513,575 + -1.1 513,674 + greB BNILDI_02700 0.11 +0.4 513,678 + greB BNILDI_02700 0.12 -0.5 513,678 + greB BNILDI_02700 0.12 -1.8 513,678 + greB BNILDI_02700 0.12 -1.0 513,679 - greB BNILDI_02700 0.12 +0.6 513,679 - greB BNILDI_02700 0.12 -1.0 513,679 - greB BNILDI_02700 0.12 -0.3 513,768 + greB BNILDI_02700 0.31 -1.5 513,768 + greB BNILDI_02700 0.31 +0.2 513,769 - greB BNILDI_02700 0.31 -0.4 513,769 - greB BNILDI_02700 0.31 +0.6 513,769 - greB BNILDI_02700 0.31 -1.2 513,770 + greB BNILDI_02700 0.31 -0.8 513,770 + greB BNILDI_02700 0.31 +1.4 513,773 + greB BNILDI_02700 0.32 -0.7 513,774 - greB BNILDI_02700 0.32 -0.5 513,810 + greB BNILDI_02700 0.40 -0.3 513,818 + greB BNILDI_02700 0.41 +0.6 513,963 - greB BNILDI_02700 0.72 +0.2 513,969 + greB BNILDI_02700 0.73 +0.1 513,969 + greB BNILDI_02700 0.73 +0.6 513,969 + greB BNILDI_02700 0.73 +0.2 514,040 + greB BNILDI_02700 0.88 +0.5 514,066 - -0.5 514,066 - -0.9 514,152 - +0.5 514,152 - +0.2 514,155 + +0.3 514,155 + +1.6 514,156 - +0.8 514,221 - -0.3 514,221 - -0.5 514,378 - +1.0 514,503 + yhgF BNILDI_02705 0.13 +1.4 514,503 + yhgF BNILDI_02705 0.13 -0.3 514,512 + yhgF BNILDI_02705 0.14 -0.4 514,626 + yhgF BNILDI_02705 0.19 -0.1 514,626 + yhgF BNILDI_02705 0.19 +0.4 514,627 - yhgF BNILDI_02705 0.19 +0.7 514,683 + yhgF BNILDI_02705 0.21 +0.2 514,684 - yhgF BNILDI_02705 0.21 +0.3 514,740 + yhgF BNILDI_02705 0.24 -0.9 514,740 + yhgF BNILDI_02705 0.24 +1.0 514,894 + yhgF BNILDI_02705 0.30 -0.8 514,951 - yhgF BNILDI_02705 0.33 -1.5 515,010 - yhgF BNILDI_02705 0.35 +0.3 515,327 + yhgF BNILDI_02705 0.49 +0.1 515,461 - yhgF BNILDI_02705 0.55 -0.8 515,543 - yhgF BNILDI_02705 0.58 +0.9 515,594 - yhgF BNILDI_02705 0.60 +0.1 515,601 + yhgF BNILDI_02705 0.61 -0.2 515,601 + yhgF BNILDI_02705 0.61 +1.1 515,653 + yhgF BNILDI_02705 0.63 -0.8 515,653 + yhgF BNILDI_02705 0.63 +1.3 515,653 + yhgF BNILDI_02705 0.63 -0.1 516,009 - yhgF BNILDI_02705 0.78 +0.5 516,037 + yhgF BNILDI_02705 0.79 -2.1 516,037 + yhgF BNILDI_02705 0.79 -0.2 516,037 + yhgF BNILDI_02705 0.79 +0.5 516,037 + yhgF BNILDI_02705 0.79 +0.1 516,038 - yhgF BNILDI_02705 0.79 -0.2 516,038 - yhgF BNILDI_02705 0.79 +0.2 516,093 - yhgF BNILDI_02705 0.82 +2.2 516,329 + +0.1 516,330 - -1.5 516,330 - -2.1 516,335 + +0.7 516,591 - +0.3 516,645 + +0.5 516,645 + -0.6 516,646 - +0.6 516,646 - -1.2 516,729 + +1.2 516,777 + +0.1 516,778 - +0.4 516,918 + +0.2 516,918 + +0.1 516,919 - -1.0 516,919 - -0.2 516,919 - -0.1 516,919 - +0.0 516,919 - +0.7 516,919 - +0.7 516,944 + +0.2 516,944 + -0.0 516,944 + -0.2 516,944 + -1.3 516,944 + -0.4 516,960 - -1.3 516,960 - -1.0 516,970 + -0.1 517,047 + feoA BNILDI_02710 0.41 +1.8 517,047 + feoA BNILDI_02710 0.41 +0.0 517,064 - feoA BNILDI_02710 0.49 -0.9 517,155 + feoA BNILDI_02710 0.89 -0.9 517,213 + +0.4 517,213 + -1.2 517,219 + +0.5 517,219 + -0.8 517,252 + -0.5 517,252 + -1.8 517,256 + -0.6 517,285 + -1.8 517,285 + -1.3 517,286 - +1.6 517,289 + +0.2 517,289 + +0.2 517,289 + -0.9 517,290 - +0.0 517,317 - -0.3 517,377 + -1.3 517,378 - +2.8 517,513 + feoB BNILDI_02715 0.14 -0.1 517,513 + feoB BNILDI_02715 0.14 -0.6
Or see this region's nucleotide sequence