Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gph and gph overlap by 8 nucleotides gph and dam overlap by 8 nucleotides dam and dam are separated by 17 nucleotides
BNILDI_02590: gph - phosphoglycolate phosphatase, at 489,372 to 490,376
gph
BNILDI_02595: gph - phosphoglycolate phosphatase, at 490,369 to 491,127
gph
BNILDI_02600: dam - adenine-specific DNA-methyltransferase, at 491,120 to 491,797
dam
BNILDI_02605: dam - adenine-specific DNA-methyltransferase, at 491,815 to 492,651
dam
Position (kb) 490
491
492 Strain fitness (log2 ratio) -1
0
1
2 at 490.433 kb on - strand at 490.435 kb on - strand at 490.443 kb on - strand at 490.481 kb on + strand, within gph at 490.485 kb on + strand, within gph at 490.485 kb on + strand, within gph at 490.485 kb on + strand, within gph at 490.486 kb on - strand, within gph at 490.486 kb on - strand, within gph at 490.486 kb on - strand, within gph at 490.486 kb on - strand, within gph at 490.606 kb on + strand, within gph at 490.665 kb on + strand, within gph at 490.680 kb on + strand, within gph at 490.681 kb on - strand, within gph at 490.684 kb on + strand, within gph at 490.685 kb on - strand, within gph at 490.685 kb on - strand, within gph at 490.738 kb on + strand, within gph at 490.774 kb on - strand, within gph at 490.823 kb on + strand, within gph at 490.823 kb on + strand, within gph at 490.823 kb on + strand, within gph at 490.824 kb on - strand, within gph at 490.824 kb on - strand, within gph at 490.824 kb on - strand, within gph at 490.851 kb on + strand, within gph at 490.851 kb on + strand, within gph at 490.851 kb on + strand, within gph at 490.851 kb on + strand, within gph at 490.852 kb on - strand, within gph at 490.855 kb on + strand, within gph at 490.855 kb on + strand, within gph at 490.856 kb on - strand, within gph at 490.989 kb on + strand, within gph at 490.989 kb on + strand, within gph at 491.028 kb on - strand, within gph at 491.038 kb on - strand, within gph at 491.041 kb on + strand, within gph at 491.079 kb on + strand at 491.079 kb on + strand at 491.080 kb on - strand at 491.122 kb on - strand at 491.133 kb on - strand at 491.133 kb on - strand at 491.425 kb on - strand, within dam at 491.598 kb on - strand, within dam at 491.900 kb on - strand, within dam at 492.073 kb on - strand, within dam at 492.116 kb on + strand, within dam
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 490,433 - -0.5 490,435 - +2.3 490,443 - -0.3 490,481 + gph BNILDI_02595 0.15 +0.6 490,485 + gph BNILDI_02595 0.15 -0.2 490,485 + gph BNILDI_02595 0.15 -1.2 490,485 + gph BNILDI_02595 0.15 -0.2 490,486 - gph BNILDI_02595 0.15 +1.0 490,486 - gph BNILDI_02595 0.15 -1.3 490,486 - gph BNILDI_02595 0.15 +0.4 490,486 - gph BNILDI_02595 0.15 -0.1 490,606 + gph BNILDI_02595 0.31 -0.2 490,665 + gph BNILDI_02595 0.39 -1.0 490,680 + gph BNILDI_02595 0.41 -1.5 490,681 - gph BNILDI_02595 0.41 +0.1 490,684 + gph BNILDI_02595 0.42 -0.3 490,685 - gph BNILDI_02595 0.42 +0.3 490,685 - gph BNILDI_02595 0.42 -0.2 490,738 + gph BNILDI_02595 0.49 -0.3 490,774 - gph BNILDI_02595 0.53 +0.1 490,823 + gph BNILDI_02595 0.60 +0.3 490,823 + gph BNILDI_02595 0.60 +0.3 490,823 + gph BNILDI_02595 0.60 +0.2 490,824 - gph BNILDI_02595 0.60 -0.2 490,824 - gph BNILDI_02595 0.60 -0.1 490,824 - gph BNILDI_02595 0.60 +0.1 490,851 + gph BNILDI_02595 0.64 -0.7 490,851 + gph BNILDI_02595 0.64 -0.2 490,851 + gph BNILDI_02595 0.64 +1.1 490,851 + gph BNILDI_02595 0.64 -0.6 490,852 - gph BNILDI_02595 0.64 +0.6 490,855 + gph BNILDI_02595 0.64 -0.2 490,855 + gph BNILDI_02595 0.64 -0.6 490,856 - gph BNILDI_02595 0.64 -0.9 490,989 + gph BNILDI_02595 0.82 -0.3 490,989 + gph BNILDI_02595 0.82 -0.1 491,028 - gph BNILDI_02595 0.87 +0.0 491,038 - gph BNILDI_02595 0.88 -0.7 491,041 + gph BNILDI_02595 0.89 +0.8 491,079 + +1.1 491,079 + -0.2 491,080 - -0.3 491,122 - +0.0 491,133 - -0.4 491,133 - -1.0 491,425 - dam BNILDI_02600 0.45 +0.3 491,598 - dam BNILDI_02600 0.71 +0.5 491,900 - dam BNILDI_02605 0.10 -0.8 492,073 - dam BNILDI_02605 0.31 -0.6 492,116 + dam BNILDI_02605 0.36 -0.2
Or see this region's nucleotide sequence