Strain Fitness in Escherichia coli ECRC62 around BNILDI_01310

Experiment: JK38

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhaK and yhaL are separated by 22 nucleotidesyhaL and yhaM are separated by 211 nucleotidesyhaM and dlsT are separated by 27 nucleotides BNILDI_01300: yhaK - Pirin-like protein YhaK, at 253,869 to 254,570 yhaK BNILDI_01305: yhaL - Uncharacterized protein YhaL, at 254,593 to 254,757 yhaL BNILDI_01310: yhaM - UPF0597 protein YhaM, at 254,969 to 256,279 yhaM BNILDI_01315: dlsT - putative serine transporter, at 256,307 to 257,638 dlsT Position (kb) 254 255 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 253.978 kb on - strand, within yhaKat 254.043 kb on + strand, within yhaKat 254.063 kb on - strand, within yhaKat 254.274 kb on - strand, within yhaKat 254.274 kb on - strand, within yhaKat 254.293 kb on + strand, within yhaKat 254.568 kb on + strandat 254.569 kb on - strandat 254.599 kb on - strandat 254.825 kb on - strandat 254.922 kb on + strandat 255.220 kb on + strand, within yhaMat 255.340 kb on + strand, within yhaMat 255.348 kb on + strand, within yhaMat 255.348 kb on + strand, within yhaMat 255.348 kb on + strand, within yhaMat 255.473 kb on - strand, within yhaMat 255.473 kb on - strand, within yhaMat 255.526 kb on + strand, within yhaMat 255.616 kb on + strand, within yhaMat 255.650 kb on + strand, within yhaMat 255.817 kb on + strand, within yhaMat 255.818 kb on - strand, within yhaMat 256.127 kb on + strand, within yhaMat 256.127 kb on + strand, within yhaMat 256.128 kb on - strand, within yhaMat 256.217 kb on + strandat 256.218 kb on - strandat 256.218 kb on - strandat 256.279 kb on + strandat 256.462 kb on + strand, within dlsTat 256.462 kb on + strand, within dlsTat 256.462 kb on + strand, within dlsTat 256.463 kb on - strand, within dlsTat 256.463 kb on - strand, within dlsTat 256.598 kb on + strand, within dlsTat 256.632 kb on + strand, within dlsTat 256.758 kb on + strand, within dlsTat 256.868 kb on - strand, within dlsTat 256.926 kb on - strand, within dlsTat 256.969 kb on + strand, within dlsTat 256.970 kb on - strand, within dlsTat 256.972 kb on + strand, within dlsTat 256.973 kb on - strand, within dlsTat 257.023 kb on - strand, within dlsTat 257.166 kb on + strand, within dlsTat 257.166 kb on + strand, within dlsTat 257.209 kb on + strand, within dlsTat 257.209 kb on + strand, within dlsTat 257.210 kb on - strand, within dlsTat 257.210 kb on - strand, within dlsTat 257.218 kb on - strand, within dlsTat 257.218 kb on - strand, within dlsT

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Per-strain Table

Position Strand Gene LocusTag Fraction JK38
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253,978 - yhaK BNILDI_01300 0.16 +1.1
254,043 + yhaK BNILDI_01300 0.25 -1.1
254,063 - yhaK BNILDI_01300 0.28 -0.2
254,274 - yhaK BNILDI_01300 0.58 -1.0
254,274 - yhaK BNILDI_01300 0.58 -0.2
254,293 + yhaK BNILDI_01300 0.60 -0.1
254,568 + +2.0
254,569 - +0.1
254,599 - +1.2
254,825 - +0.2
254,922 + -0.1
255,220 + yhaM BNILDI_01310 0.19 +0.2
255,340 + yhaM BNILDI_01310 0.28 -0.3
255,348 + yhaM BNILDI_01310 0.29 -0.4
255,348 + yhaM BNILDI_01310 0.29 +0.8
255,348 + yhaM BNILDI_01310 0.29 +0.1
255,473 - yhaM BNILDI_01310 0.38 -2.9
255,473 - yhaM BNILDI_01310 0.38 +0.2
255,526 + yhaM BNILDI_01310 0.42 -1.1
255,616 + yhaM BNILDI_01310 0.49 +1.0
255,650 + yhaM BNILDI_01310 0.52 +1.8
255,817 + yhaM BNILDI_01310 0.65 -0.7
255,818 - yhaM BNILDI_01310 0.65 -1.4
256,127 + yhaM BNILDI_01310 0.88 -0.4
256,127 + yhaM BNILDI_01310 0.88 -0.4
256,128 - yhaM BNILDI_01310 0.88 -0.4
256,217 + +0.2
256,218 - +1.2
256,218 - +0.1
256,279 + +0.2
256,462 + dlsT BNILDI_01315 0.12 +0.8
256,462 + dlsT BNILDI_01315 0.12 +0.1
256,462 + dlsT BNILDI_01315 0.12 +0.4
256,463 - dlsT BNILDI_01315 0.12 -0.4
256,463 - dlsT BNILDI_01315 0.12 -0.5
256,598 + dlsT BNILDI_01315 0.22 -0.3
256,632 + dlsT BNILDI_01315 0.24 -0.5
256,758 + dlsT BNILDI_01315 0.34 +0.0
256,868 - dlsT BNILDI_01315 0.42 -0.0
256,926 - dlsT BNILDI_01315 0.46 +1.4
256,969 + dlsT BNILDI_01315 0.50 -1.8
256,970 - dlsT BNILDI_01315 0.50 +0.6
256,972 + dlsT BNILDI_01315 0.50 +1.0
256,973 - dlsT BNILDI_01315 0.50 +0.2
257,023 - dlsT BNILDI_01315 0.54 -0.3
257,166 + dlsT BNILDI_01315 0.64 +0.8
257,166 + dlsT BNILDI_01315 0.64 -0.7
257,209 + dlsT BNILDI_01315 0.68 +0.7
257,209 + dlsT BNILDI_01315 0.68 +0.1
257,210 - dlsT BNILDI_01315 0.68 -0.6
257,210 - dlsT BNILDI_01315 0.68 -0.4
257,218 - dlsT BNILDI_01315 0.68 -0.2
257,218 - dlsT BNILDI_01315 0.68 -0.3

Or see this region's nucleotide sequence