Experiment: JK38
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yqiB and nudF are separated by 0 nucleotides nudF and tolC are separated by 204 nucleotides tolC and ygiB are separated by 147 nucleotides ygiB and ygiC are separated by 5 nucleotides
BNILDI_00895: yqiB - DUF1249 domain-containing protein, at 171,858 to 172,280
yqiB
BNILDI_00900: nudF - ADP-ribose diphosphatase, at 172,281 to 172,910
nudF
BNILDI_00905: tolC - outer membrane channel protein TolC, at 173,115 to 174,596
tolC
BNILDI_00910: ygiB - DUF1190 domain-containing protein, at 174,744 to 175,415
ygiB
BNILDI_00915: ygiC - Putative acid--amine ligase YgiC, at 175,421 to 176,581
ygiC
Position (kb) 173
174
175 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 172.168 kb on + strand, within yqiB at 172.174 kb on - strand, within yqiB at 172.174 kb on - strand, within yqiB at 172.282 kb on + strand at 172.381 kb on + strand, within nudF at 172.382 kb on - strand, within nudF at 172.382 kb on - strand, within nudF at 172.415 kb on + strand, within nudF at 172.416 kb on - strand, within nudF at 172.445 kb on + strand, within nudF at 172.481 kb on + strand, within nudF at 172.481 kb on + strand, within nudF at 172.482 kb on - strand, within nudF at 172.482 kb on - strand, within nudF at 172.819 kb on - strand, within nudF at 172.914 kb on + strand at 173.216 kb on + strand at 173.216 kb on + strand at 173.217 kb on - strand at 173.235 kb on - strand at 173.273 kb on + strand, within tolC at 173.293 kb on + strand, within tolC at 173.305 kb on + strand, within tolC at 173.311 kb on + strand, within tolC at 173.311 kb on + strand, within tolC at 173.322 kb on + strand, within tolC at 173.322 kb on + strand, within tolC at 173.328 kb on + strand, within tolC at 173.328 kb on + strand, within tolC at 173.329 kb on - strand, within tolC at 173.330 kb on + strand, within tolC at 173.412 kb on - strand, within tolC at 173.612 kb on + strand, within tolC at 173.697 kb on - strand, within tolC at 173.716 kb on + strand, within tolC at 173.745 kb on + strand, within tolC at 173.745 kb on + strand, within tolC at 173.746 kb on - strand, within tolC at 173.851 kb on + strand, within tolC at 173.914 kb on + strand, within tolC at 173.915 kb on - strand, within tolC at 173.961 kb on + strand, within tolC at 173.963 kb on + strand, within tolC at 174.015 kb on - strand, within tolC at 174.099 kb on + strand, within tolC at 174.100 kb on - strand, within tolC at 174.182 kb on + strand, within tolC at 174.191 kb on + strand, within tolC at 174.192 kb on - strand, within tolC at 174.203 kb on + strand, within tolC at 174.396 kb on - strand, within tolC at 174.497 kb on + strand at 174.510 kb on + strand at 174.578 kb on + strand at 174.640 kb on + strand at 174.716 kb on + strand at 174.716 kb on + strand at 174.720 kb on + strand at 174.721 kb on - strand at 174.721 kb on - strand at 174.936 kb on - strand, within ygiB at 175.128 kb on + strand, within ygiB at 175.217 kb on + strand, within ygiB at 175.221 kb on + strand, within ygiB at 175.222 kb on - strand, within ygiB at 175.367 kb on + strand at 175.435 kb on + strand at 175.435 kb on + strand at 175.499 kb on + strand at 175.529 kb on + strand at 175.530 kb on - strand at 175.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK38 remove 172,168 + yqiB BNILDI_00895 0.73 -0.4 172,174 - yqiB BNILDI_00895 0.75 -0.6 172,174 - yqiB BNILDI_00895 0.75 +0.1 172,282 + -0.8 172,381 + nudF BNILDI_00900 0.16 +0.5 172,382 - nudF BNILDI_00900 0.16 -0.8 172,382 - nudF BNILDI_00900 0.16 +0.8 172,415 + nudF BNILDI_00900 0.21 -0.6 172,416 - nudF BNILDI_00900 0.21 -0.4 172,445 + nudF BNILDI_00900 0.26 -0.8 172,481 + nudF BNILDI_00900 0.32 -0.8 172,481 + nudF BNILDI_00900 0.32 -1.2 172,482 - nudF BNILDI_00900 0.32 +0.8 172,482 - nudF BNILDI_00900 0.32 -0.2 172,819 - nudF BNILDI_00900 0.85 -1.2 172,914 + -0.4 173,216 + +0.2 173,216 + -3.5 173,217 - -1.4 173,235 - -3.5 173,273 + tolC BNILDI_00905 0.11 -4.2 173,293 + tolC BNILDI_00905 0.12 -0.2 173,305 + tolC BNILDI_00905 0.13 -3.9 173,311 + tolC BNILDI_00905 0.13 -1.9 173,311 + tolC BNILDI_00905 0.13 +1.8 173,322 + tolC BNILDI_00905 0.14 -2.1 173,322 + tolC BNILDI_00905 0.14 -1.4 173,328 + tolC BNILDI_00905 0.14 -0.5 173,328 + tolC BNILDI_00905 0.14 -1.9 173,329 - tolC BNILDI_00905 0.14 -1.5 173,330 + tolC BNILDI_00905 0.15 -3.2 173,412 - tolC BNILDI_00905 0.20 -1.7 173,612 + tolC BNILDI_00905 0.34 -0.8 173,697 - tolC BNILDI_00905 0.39 -0.8 173,716 + tolC BNILDI_00905 0.41 -1.2 173,745 + tolC BNILDI_00905 0.43 -2.9 173,745 + tolC BNILDI_00905 0.43 -3.4 173,746 - tolC BNILDI_00905 0.43 -3.7 173,851 + tolC BNILDI_00905 0.50 -2.0 173,914 + tolC BNILDI_00905 0.54 -5.0 173,915 - tolC BNILDI_00905 0.54 -3.4 173,961 + tolC BNILDI_00905 0.57 -1.9 173,963 + tolC BNILDI_00905 0.57 -2.6 174,015 - tolC BNILDI_00905 0.61 -3.0 174,099 + tolC BNILDI_00905 0.66 -0.5 174,100 - tolC BNILDI_00905 0.66 -1.0 174,182 + tolC BNILDI_00905 0.72 -3.3 174,191 + tolC BNILDI_00905 0.73 -1.0 174,192 - tolC BNILDI_00905 0.73 -3.1 174,203 + tolC BNILDI_00905 0.73 -2.2 174,396 - tolC BNILDI_00905 0.86 -1.0 174,497 + +0.0 174,510 + +0.2 174,578 + -0.2 174,640 + -0.1 174,716 + +0.8 174,716 + +0.8 174,720 + -0.3 174,721 - -1.4 174,721 - -0.3 174,936 - ygiB BNILDI_00910 0.29 -0.2 175,128 + ygiB BNILDI_00910 0.57 -0.6 175,217 + ygiB BNILDI_00910 0.70 +1.8 175,221 + ygiB BNILDI_00910 0.71 +0.5 175,222 - ygiB BNILDI_00910 0.71 +0.7 175,367 + +0.5 175,435 + +0.8 175,435 + -1.6 175,499 + +0.8 175,529 + +0.5 175,530 - +0.5 175,533 - -0.3
Or see this region's nucleotide sequence