Experiment: b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS09185 and HMPREF1181_RS09190 are separated by 53 nucleotides HMPREF1181_RS09190 and HMPREF1181_RS09195 are separated by 0 nucleotides HMPREF1181_RS09195 and HMPREF1181_RS09200 are separated by 43 nucleotides
HMPREF1181_RS09185: HMPREF1181_RS09185 - ParA family protein, at 451,574 to 452,341
_RS09185
HMPREF1181_RS09190: HMPREF1181_RS09190 - ParB/RepB/Spo0J family partition protein, at 452,395 to 453,282
_RS09190
HMPREF1181_RS09195: HMPREF1181_RS09195 - hypothetical protein, at 453,283 to 454,134
_RS09195
HMPREF1181_RS09200: HMPREF1181_RS09200 - transglycosylase SLT domain-containing protein, at 454,178 to 455,476
_RS09200
Position (kb) 452
453
454 Strain fitness (log2 ratio) -2
-1
0
1 at 451.529 kb on + strand at 451.546 kb on + strand at 452.360 kb on + strand at 452.363 kb on + strand at 454.171 kb on + strand at 454.171 kb on + strand at 454.172 kb on - strand at 454.172 kb on - strand at 454.175 kb on + strand at 454.175 kb on + strand at 454.175 kb on + strand at 454.176 kb on - strand at 454.176 kb on - strand at 454.218 kb on + strand at 454.242 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml (C) remove 451,529 + +0.7 451,546 + +0.2 452,360 + +0.5 452,363 + -0.1 454,171 + +0.1 454,171 + +0.2 454,172 - +0.3 454,172 - -0.3 454,175 + -0.6 454,175 + -2.2 454,175 + +0.6 454,176 - -2.1 454,176 - -0.1 454,218 + +1.2 454,242 - -0.6
Or see this region's nucleotide sequence