Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS07505

Experiment: b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS07500 and HMPREF1181_RS07505 are separated by 89 nucleotidesHMPREF1181_RS07505 and HMPREF1181_RS17325 are separated by 120 nucleotidesHMPREF1181_RS17325 and HMPREF1181_RS07510 are separated by 12 nucleotides HMPREF1181_RS07500: HMPREF1181_RS07500 - GTPase Era, at 885,271 to 886,152 _RS07500 HMPREF1181_RS07505: HMPREF1181_RS07505 - ketoacyl-ACP synthase III, at 886,242 to 887,246 _RS07505 HMPREF1181_RS17325: HMPREF1181_RS17325 - 50S ribosomal protein L32, at 887,367 to 887,552 _RS17325 HMPREF1181_RS07510: HMPREF1181_RS07510 - DUF177 domain-containing protein, at 887,565 to 888,146 _RS07510 Position (kb) 886 887 888Strain fitness (log2 ratio) -2 -1 0 1at 885.295 kb on - strandat 886.216 kb on - strandat 886.216 kb on - strandat 887.782 kb on - strand, within HMPREF1181_RS07510at 887.782 kb on - strand, within HMPREF1181_RS07510at 887.784 kb on - strand, within HMPREF1181_RS07510at 887.847 kb on - strand, within HMPREF1181_RS07510at 887.864 kb on - strand, within HMPREF1181_RS07510at 887.892 kb on - strand, within HMPREF1181_RS07510at 887.892 kb on - strand, within HMPREF1181_RS07510at 888.051 kb on - strand, within HMPREF1181_RS07510at 888.132 kb on - strandat 888.184 kb on - strandat 888.197 kb on - strandat 888.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction b-Glucan from Beet (1,2-b-Glucan) 2.5 mg/ml (C)
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885,295 - -0.2
886,216 - +0.8
886,216 - +0.0
887,782 - HMPREF1181_RS07510 0.37 -2.1
887,782 - HMPREF1181_RS07510 0.37 -0.2
887,784 - HMPREF1181_RS07510 0.38 +0.6
887,847 - HMPREF1181_RS07510 0.48 -1.0
887,864 - HMPREF1181_RS07510 0.51 -1.4
887,892 - HMPREF1181_RS07510 0.56 -1.4
887,892 - HMPREF1181_RS07510 0.56 -0.7
888,051 - HMPREF1181_RS07510 0.84 +0.1
888,132 - -0.3
888,184 - +0.6
888,197 - +0.1
888,197 - +0.2

Or see this region's nucleotide sequence