Strain Fitness in Variovorax sp. SCN45 around GFF7145

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
10,504	+		GFF7143	0.26	-0.7
10,505	-		GFF7143	0.26	+0.0
10,912	+		GFF7143	0.68	+0.2
10,912	+		GFF7143	0.68	+0.3
10,912	+		GFF7143	0.68	-0.6
10,912	+		GFF7143	0.68	-1.0
10,912	+		GFF7143	0.68	-0.6
10,912	+		GFF7143	0.68	-0.6
10,912	+		GFF7143	0.68	-0.2
10,912	+		GFF7143	0.68	-0.4
10,912	+		GFF7143	0.68	-1.1
10,912	+		GFF7143	0.68	-0.2
10,912	+		GFF7143	0.68	-0.0
10,912	+		GFF7143	0.68	+1.8
10,912	+		GFF7143	0.68	-0.2
10,912	+		GFF7143	0.68	-0.5
10,912	+		GFF7143	0.68	+0.2
10,913	-		GFF7143	0.68	-0.1
10,913	-		GFF7143	0.68	-0.1
10,913	-		GFF7143	0.68	-0.2
10,913	-		GFF7143	0.68	+0.8
10,913	-		GFF7143	0.68	+0.0
10,913	-		GFF7143	0.68	-1.1
10,913	-		GFF7143	0.68	-0.3
10,913	-		GFF7143	0.68	-1.7
10,913	-		GFF7143	0.68	-0.5
10,913	-		GFF7143	0.68	-0.8
10,913	-		GFF7143	0.68	+0.2
10,913	-		GFF7143	0.68	-0.2
10,913	-		GFF7143	0.68	-0.5
10,913	-		GFF7143	0.68	-0.5
10,913	-		GFF7143	0.68	-0.7
10,913	-		GFF7143	0.68	-0.5
10,913	-		GFF7143	0.68	-0.2
10,913	-		GFF7143	0.68	+1.0
10,913	-		GFF7143	0.68	-0.7
10,913	-		GFF7143	0.68	-0.6
11,370	+				+0.0
11,370	+				-0.3
11,371	-				-1.0
11,373	+				+0.1
11,373	+				+0.0
11,373	+				-0.0
11,373	+				-2.0
11,373	+				+0.1
11,373	+				-0.2
11,373	+				+0.5
11,373	+				+1.8
11,373	+				-0.2
11,373	+				-0.9
11,373	+				-1.3
11,373	+				-0.6
11,373	+				+0.1
11,373	+				-1.8
11,373	+				-0.9
11,373	+				+0.2
11,373	+				+1.4
11,373	+				-0.1
11,373	+				-1.5
11,373	+				+1.8
11,373	+				+0.1
11,373	+				-0.9
11,373	+				-0.6
11,373	+				-1.0
11,373	+				+0.3
11,373	+				-0.8
11,373	+				-0.6
11,373	+				-0.3
11,373	+				-0.7
11,373	+				+0.5
11,373	+				-0.2
11,373	+				-0.1
11,373	+				+0.4
11,373	+				-0.2
11,373	+				-1.0
11,374	-				-0.3
11,374	-				-0.6
11,374	-				-0.1
11,374	-				-0.8
11,374	-				+0.4
11,374	-				+0.3
11,374	-				-0.7
11,374	-				-1.4
11,374	-				-0.3
11,374	-				-0.1
11,374	-				-1.4
11,374	-				-0.8
11,374	-				+0.1
11,374	-				+0.3
11,374	-				+0.4
11,374	-				-0.7
11,374	-				-0.5
11,374	-				-0.1
11,374	-				-0.3
11,374	-				-0.1
11,374	-				-0.4
11,374	-				-0.4
11,374	-				-0.3
11,374	-				-0.2
11,374	-				+0.0
11,374	-				+0.3
11,374	-				+0.0
11,374	-				+2.8
11,374	-				-0.2
11,374	-				-0.1
11,377	+				+0.4
11,377	+				+1.8
11,377	+				+0.7
11,377	+				-0.1
11,377	+				+0.2
11,378	-				-0.9
11,390	+				-0.2
11,390	+				+1.4
11,390	+				-0.7
11,390	+				-0.5
11,390	+				-0.3
11,390	+				-1.1
11,390	+				-0.5
11,390	+				-0.0
11,390	+				-0.9
11,390	+				-0.0
11,391	-				+0.6
11,391	-				-0.6
11,391	-				+0.5
11,391	-				-0.5
11,391	-				+0.1
11,391	-				-0.2
11,391	-				-0.2
11,391	-				-0.2
11,391	-				-2.0
11,391	-				+0.0
11,391	-				+0.6
11,391	-				-0.5
11,426	+				-1.4
11,426	+				-0.1
11,426	+				-0.0
11,426	+				-1.2
11,426	+				+0.1
11,426	+				-0.3
11,426	+				+1.3
11,426	+				+0.0
11,426	+				-0.1
11,426	+				-0.5
11,426	+				-1.5
11,426	+				-0.5
11,427	-				+0.6
11,427	-				-0.2
11,427	-				-0.8
11,427	-				+0.2
11,427	-				+0.4
11,427	-				-0.2
11,427	-				-0.2
11,427	-				+0.4
11,540	+		GFF7145	0.22	-1.3
11,540	+		GFF7145	0.22	+0.1
11,540	+		GFF7145	0.22	+0.5
11,540	+		GFF7145	0.22	+0.2
11,540	+		GFF7145	0.22	-1.2
11,540	+		GFF7145	0.22	-0.3
11,541	-		GFF7145	0.22	+1.6
11,541	-		GFF7145	0.22	+0.6
11,541	-		GFF7145	0.22	-0.3
11,541	-		GFF7145	0.22	-0.4
11,541	-		GFF7145	0.22	-1.2
11,541	-		GFF7145	0.22	+0.5
11,541	-		GFF7145	0.22	-1.5
11,546	+		GFF7145	0.22	+0.7
11,547	-		GFF7145	0.23	-0.7
11,547	-		GFF7145	0.23	-1.2
11,654	+		GFF7145	0.38	+0.6
11,654	+		GFF7145	0.38	-0.6
11,654	+		GFF7145	0.38	+0.2
11,654	+		GFF7145	0.38	+0.2
11,654	+		GFF7145	0.38	-0.5
11,654	+		GFF7145	0.38	-0.0
11,654	+		GFF7145	0.38	+0.9
11,654	+		GFF7145	0.38	-0.9
11,654	+		GFF7145	0.38	-1.0
11,654	+		GFF7145	0.38	+0.1
11,654	+		GFF7145	0.38	+1.8
11,654	+		GFF7145	0.38	-0.6
11,654	+		GFF7145	0.38	-0.3
11,654	+		GFF7145	0.38	+0.1
11,654	+		GFF7145	0.38	-0.6
11,654	+		GFF7145	0.38	+0.6
11,654	+		GFF7145	0.38	+0.4
11,654	+		GFF7145	0.38	-0.4
11,655	-		GFF7145	0.38	-1.5
11,655	-		GFF7145	0.38	+1.0
11,655	-		GFF7145	0.38	-1.7
11,655	-		GFF7145	0.38	+0.8
11,655	-		GFF7145	0.38	-0.0
11,655	-		GFF7145	0.38	-2.4
11,655	-		GFF7145	0.38	+0.3
11,655	-		GFF7145	0.38	-0.5
11,655	-		GFF7145	0.38	-0.8
11,655	-		GFF7145	0.38	-0.1
11,996	+		GFF7145	0.87	+0.8
11,996	+		GFF7145	0.87	-0.6
11,996	+		GFF7145	0.87	+0.5
11,996	+		GFF7145	0.87	+0.8
11,997	-		GFF7145	0.87	+1.4
11,997	-		GFF7145	0.87	-0.7
12,426	+		GFF7146	0.26	+0.9
12,426	+		GFF7146	0.26	-0.9
12,426	+		GFF7146	0.26	-1.5
12,426	+		GFF7146	0.26	-0.0
12,426	+		GFF7146	0.26	+0.4
12,426	+		GFF7146	0.26	-0.4
12,427	-		GFF7146	0.26	-0.6
12,427	-		GFF7146	0.26	-0.8
12,427	-		GFF7146	0.26	-0.8
12,427	-		GFF7146	0.26	-0.3
12,427	-		GFF7146	0.26	+0.2
12,427	-		GFF7146	0.26	-0.4
12,427	-		GFF7146	0.26	-0.3
12,427	-		GFF7146	0.26	-0.7
12,427	-		GFF7146	0.26	-0.8
12,532	+		GFF7146	0.34	-0.1
12,532	+		GFF7146	0.34	-0.1
12,532	+		GFF7146	0.34	+0.6
12,532	+		GFF7146	0.34	-0.2
12,532	+		GFF7146	0.34	+0.2
12,532	+		GFF7146	0.34	+0.9
12,532	+		GFF7146	0.34	-1.7
12,532	+		GFF7146	0.34	-0.7
12,532	+		GFF7146	0.34	-0.2
12,533	-		GFF7146	0.34	-0.5
12,533	-		GFF7146	0.34	-0.2
12,533	-		GFF7146	0.34	+0.0
12,533	-		GFF7146	0.34	-1.5
12,533	-		GFF7146	0.34	-0.2
12,533	-		GFF7146	0.34	-0.5
12,533	-		GFF7146	0.34	-0.4
12,533	-		GFF7146	0.34	+0.3