Strain Fitness in Variovorax sp. SCN45 around GFF6683

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6682 and GFF6683 are separated by 9 nucleotidesGFF6683 and GFF6684 are separated by 1 nucleotidesGFF6684 and GFF6685 are separated by 146 nucleotides GFF6682 - Efflux ABC transporter, permease protein, at 58,828 to 60,321 GFF6682 GFF6683 - Efflux ABC transporter, permease protein, at 60,331 to 61,743 GFF6683 GFF6684 - ABC transporter, ATP-binding protein, at 61,745 to 62,452 GFF6684 GFF6685 - LSU ribosomal protein L36p @ LSU ribosomal protein L36p, zinc-independent, at 62,599 to 62,748 GFF6685 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 59.556 kb on - strand, within GFF6682at 59.556 kb on - strand, within GFF6682at 59.789 kb on + strand, within GFF6682at 59.789 kb on + strand, within GFF6682at 59.789 kb on + strand, within GFF6682at 59.790 kb on - strand, within GFF6682at 59.790 kb on - strand, within GFF6682at 59.790 kb on - strand, within GFF6682at 59.790 kb on - strand, within GFF6682at 59.823 kb on - strand, within GFF6682at 59.823 kb on - strand, within GFF6682at 59.823 kb on - strand, within GFF6682at 60.188 kb on + strandat 60.188 kb on + strandat 60.188 kb on + strandat 60.188 kb on + strandat 60.189 kb on - strandat 60.189 kb on - strandat 60.189 kb on - strandat 60.455 kb on + strandat 60.455 kb on + strandat 60.500 kb on + strand, within GFF6683at 60.500 kb on + strand, within GFF6683at 60.731 kb on + strand, within GFF6683at 60.743 kb on + strand, within GFF6683at 60.744 kb on - strand, within GFF6683at 60.752 kb on + strand, within GFF6683at 61.061 kb on + strand, within GFF6683at 61.061 kb on + strand, within GFF6683at 61.061 kb on + strand, within GFF6683at 61.061 kb on + strand, within GFF6683at 61.062 kb on - strand, within GFF6683at 61.062 kb on - strand, within GFF6683at 61.070 kb on + strand, within GFF6683at 61.562 kb on + strand, within GFF6683at 61.563 kb on - strand, within GFF6683at 61.670 kb on + strandat 61.671 kb on - strandat 61.768 kb on - strandat 61.768 kb on - strandat 62.196 kb on + strand, within GFF6684at 62.196 kb on + strand, within GFF6684at 62.197 kb on - strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.220 kb on + strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.221 kb on - strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.364 kb on + strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.365 kb on - strand, within GFF6684at 62.421 kb on + strandat 62.669 kb on + strand, within GFF6685at 62.669 kb on + strand, within GFF6685at 62.669 kb on + strand, within GFF6685at 62.669 kb on + strand, within GFF6685at 62.669 kb on + strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685at 62.670 kb on - strand, within GFF6685

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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59,556 - GFF6682 0.49 +0.7
59,556 - GFF6682 0.49 -0.4
59,789 + GFF6682 0.64 -0.2
59,789 + GFF6682 0.64 +0.0
59,789 + GFF6682 0.64 -0.9
59,790 - GFF6682 0.64 -0.8
59,790 - GFF6682 0.64 +0.9
59,790 - GFF6682 0.64 +0.7
59,790 - GFF6682 0.64 -1.1
59,823 - GFF6682 0.67 -1.6
59,823 - GFF6682 0.67 -0.7
59,823 - GFF6682 0.67 +0.1
60,188 + -0.1
60,188 + -1.1
60,188 + +1.8
60,188 + +0.7
60,189 - -0.3
60,189 - +0.7
60,189 - +0.2
60,455 + +0.2
60,455 + -0.5
60,500 + GFF6683 0.12 -0.3
60,500 + GFF6683 0.12 +0.3
60,731 + GFF6683 0.28 +0.0
60,743 + GFF6683 0.29 -0.3
60,744 - GFF6683 0.29 -0.3
60,752 + GFF6683 0.30 -1.5
61,061 + GFF6683 0.52 -0.9
61,061 + GFF6683 0.52 -0.8
61,061 + GFF6683 0.52 -0.5
61,061 + GFF6683 0.52 +0.6
61,062 - GFF6683 0.52 -2.8
61,062 - GFF6683 0.52 -0.4
61,070 + GFF6683 0.52 -0.8
61,562 + GFF6683 0.87 -1.5
61,563 - GFF6683 0.87 +0.8
61,670 + -0.3
61,671 - -1.0
61,768 - +0.9
61,768 - +0.3
62,196 + GFF6684 0.64 -0.5
62,196 + GFF6684 0.64 +0.3
62,197 - GFF6684 0.64 -0.4
62,220 + GFF6684 0.67 +0.3
62,220 + GFF6684 0.67 -0.5
62,220 + GFF6684 0.67 +3.3
62,220 + GFF6684 0.67 -0.4
62,220 + GFF6684 0.67 -0.4
62,220 + GFF6684 0.67 +0.0
62,220 + GFF6684 0.67 -0.1
62,220 + GFF6684 0.67 +0.7
62,220 + GFF6684 0.67 -1.5
62,220 + GFF6684 0.67 -0.7
62,221 - GFF6684 0.67 -0.8
62,221 - GFF6684 0.67 -0.2
62,221 - GFF6684 0.67 +0.2
62,221 - GFF6684 0.67 -0.4
62,221 - GFF6684 0.67 +0.6
62,221 - GFF6684 0.67 +0.2
62,221 - GFF6684 0.67 -0.2
62,364 + GFF6684 0.87 -0.8
62,364 + GFF6684 0.87 -0.4
62,364 + GFF6684 0.87 -1.1
62,364 + GFF6684 0.87 +1.3
62,364 + GFF6684 0.87 -0.5
62,364 + GFF6684 0.87 -2.2
62,364 + GFF6684 0.87 +0.1
62,364 + GFF6684 0.87 -0.0
62,364 + GFF6684 0.87 -0.4
62,364 + GFF6684 0.87 -1.0
62,365 - GFF6684 0.88 -0.6
62,365 - GFF6684 0.88 -0.9
62,365 - GFF6684 0.88 -1.2
62,365 - GFF6684 0.88 -0.4
62,365 - GFF6684 0.88 -2.0
62,365 - GFF6684 0.88 -0.6
62,421 + -0.4
62,669 + GFF6685 0.47 +1.3
62,669 + GFF6685 0.47 -0.1
62,669 + GFF6685 0.47 -0.1
62,669 + GFF6685 0.47 +1.1
62,669 + GFF6685 0.47 -1.3
62,670 - GFF6685 0.47 -0.0
62,670 - GFF6685 0.47 +0.3
62,670 - GFF6685 0.47 -1.5
62,670 - GFF6685 0.47 -0.5
62,670 - GFF6685 0.47 +0.1
62,670 - GFF6685 0.47 +1.3
62,670 - GFF6685 0.47 +0.6

Or see this region's nucleotide sequence