Strain Fitness in Variovorax sp. SCN45 around GFF6596

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
39,427	-		GFF6595	0.56	-1.5
39,630	+		GFF6595	0.70	+0.2
39,630	+		GFF6595	0.70	-0.5
39,630	+		GFF6595	0.70	-0.8
39,630	+		GFF6595	0.70	-0.6
39,630	+		GFF6595	0.70	-0.5
39,631	-		GFF6595	0.70	-0.8
39,631	-		GFF6595	0.70	-0.6
39,631	-		GFF6595	0.70	-0.9
39,709	-		GFF6595	0.75	-0.9
39,709	-		GFF6595	0.75	-0.5
40,094	+				-1.8
40,094	+				+0.2
40,371	+		GFF6596	0.28	+0.5
40,469	+		GFF6596	0.37	-0.6
40,510	+		GFF6596	0.40	-0.3
40,581	-		GFF6596	0.47	-0.6
40,641	-		GFF6596	0.52	-0.6
40,646	+		GFF6596	0.53	-0.3
40,932	-		GFF6596	0.78	-0.4
40,960	+		GFF6596	0.81	-2.7
41,333	+		GFF6597	0.12	-0.1
41,333	+		GFF6597	0.12	+0.5
41,903	-		GFF6597	0.56	+0.1
41,903	-		GFF6597	0.56	+1.6
42,007	-		GFF6597	0.64	-0.2