Strain Fitness in Variovorax sp. SCN45 around GFF6497

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6496 and GFF6497 are separated by 183 nucleotidesGFF6497 and GFF6498 are separated by 140 nucleotides GFF6496 - Tannase and feruloyl esterase, at 71,517 to 73,235 GFF6496 GFF6497 - Protein of unknown function (DUF1501), at 73,419 to 74,630 GFF6497 GFF6498 - FIG00348192: hypothetical protein, at 74,771 to 76,363 GFF6498 Position (kb) 73 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1at 72.466 kb on + strand, within GFF6496at 72.466 kb on + strand, within GFF6496at 72.467 kb on - strand, within GFF6496at 72.467 kb on - strand, within GFF6496at 72.467 kb on - strand, within GFF6496at 72.592 kb on + strand, within GFF6496at 72.592 kb on + strand, within GFF6496at 72.592 kb on + strand, within GFF6496at 72.592 kb on + strand, within GFF6496at 72.592 kb on + strand, within GFF6496at 72.592 kb on + strand, within GFF6496at 72.592 kb on + strand, within GFF6496at 72.593 kb on - strand, within GFF6496at 72.593 kb on - strand, within GFF6496at 72.593 kb on - strand, within GFF6496at 72.593 kb on - strand, within GFF6496at 72.593 kb on - strand, within GFF6496at 72.598 kb on + strand, within GFF6496at 72.598 kb on + strand, within GFF6496at 72.598 kb on + strand, within GFF6496at 72.598 kb on + strand, within GFF6496at 72.598 kb on + strand, within GFF6496at 72.599 kb on - strand, within GFF6496at 72.599 kb on - strand, within GFF6496at 72.599 kb on - strand, within GFF6496at 72.599 kb on - strand, within GFF6496at 72.599 kb on - strand, within GFF6496at 72.599 kb on - strand, within GFF6496at 72.599 kb on - strand, within GFF6496at 72.622 kb on + strand, within GFF6496at 72.622 kb on + strand, within GFF6496at 72.622 kb on + strand, within GFF6496at 72.622 kb on + strand, within GFF6496at 72.622 kb on + strand, within GFF6496at 72.623 kb on - strand, within GFF6496at 72.623 kb on - strand, within GFF6496at 72.625 kb on + strand, within GFF6496at 72.625 kb on + strand, within GFF6496at 72.625 kb on + strand, within GFF6496at 72.625 kb on + strand, within GFF6496at 72.626 kb on - strand, within GFF6496at 72.626 kb on - strand, within GFF6496at 72.626 kb on - strand, within GFF6496at 72.626 kb on - strand, within GFF6496at 72.626 kb on - strand, within GFF6496at 72.626 kb on - strand, within GFF6496at 72.667 kb on + strand, within GFF6496at 72.667 kb on + strand, within GFF6496at 72.668 kb on - strand, within GFF6496at 72.668 kb on - strand, within GFF6496at 72.668 kb on - strand, within GFF6496at 72.668 kb on - strand, within GFF6496at 72.668 kb on - strand, within GFF6496at 72.737 kb on - strand, within GFF6496at 72.737 kb on - strand, within GFF6496at 72.737 kb on - strand, within GFF6496at 72.737 kb on - strand, within GFF6496at 72.921 kb on + strand, within GFF6496at 72.921 kb on + strand, within GFF6496at 72.922 kb on - strand, within GFF6496at 72.922 kb on - strand, within GFF6496at 72.973 kb on + strand, within GFF6496at 72.973 kb on + strand, within GFF6496at 72.973 kb on + strand, within GFF6496at 72.974 kb on - strand, within GFF6496at 72.995 kb on + strand, within GFF6496at 72.996 kb on - strand, within GFF6496at 72.999 kb on + strand, within GFF6496at 72.999 kb on + strand, within GFF6496at 73.008 kb on + strand, within GFF6496at 73.008 kb on + strand, within GFF6496at 73.008 kb on + strand, within GFF6496at 73.008 kb on + strand, within GFF6496at 73.008 kb on + strand, within GFF6496at 73.009 kb on - strand, within GFF6496at 73.009 kb on - strand, within GFF6496at 73.009 kb on - strand, within GFF6496at 73.263 kb on + strandat 73.264 kb on - strandat 73.264 kb on - strandat 73.264 kb on - strandat 73.311 kb on + strandat 73.343 kb on - strandat 73.458 kb on + strandat 73.489 kb on + strandat 73.489 kb on + strandat 73.489 kb on + strandat 73.489 kb on + strandat 73.489 kb on + strandat 73.489 kb on + strandat 73.490 kb on - strandat 73.490 kb on - strandat 73.490 kb on - strandat 73.490 kb on - strandat 73.490 kb on - strandat 73.490 kb on - strandat 73.490 kb on - strandat 73.543 kb on + strand, within GFF6497at 73.544 kb on - strand, within GFF6497at 73.544 kb on - strand, within GFF6497at 73.643 kb on - strand, within GFF6497at 73.643 kb on - strand, within GFF6497at 73.807 kb on + strand, within GFF6497at 73.808 kb on - strand, within GFF6497at 73.808 kb on - strand, within GFF6497at 73.808 kb on - strand, within GFF6497at 73.808 kb on - strand, within GFF6497at 73.808 kb on - strand, within GFF6497at 74.038 kb on + strand, within GFF6497at 74.038 kb on + strand, within GFF6497at 74.038 kb on + strand, within GFF6497at 74.038 kb on + strand, within GFF6497at 74.039 kb on - strand, within GFF6497at 74.039 kb on - strand, within GFF6497at 74.039 kb on - strand, within GFF6497at 74.039 kb on - strand, within GFF6497at 74.230 kb on + strand, within GFF6497at 74.461 kb on + strand, within GFF6497at 74.462 kb on - strand, within GFF6497at 74.462 kb on - strand, within GFF6497at 74.464 kb on + strand, within GFF6497at 74.464 kb on + strand, within GFF6497at 74.464 kb on + strand, within GFF6497at 74.464 kb on + strand, within GFF6497at 74.464 kb on + strand, within GFF6497at 74.464 kb on + strand, within GFF6497at 74.506 kb on + strand, within GFF6497at 74.759 kb on + strandat 74.759 kb on + strandat 74.759 kb on + strandat 74.766 kb on + strandat 74.767 kb on - strandat 74.767 kb on - strandat 75.069 kb on + strand, within GFF6498at 75.069 kb on + strand, within GFF6498at 75.069 kb on + strand, within GFF6498at 75.165 kb on + strand, within GFF6498at 75.165 kb on + strand, within GFF6498at 75.165 kb on + strand, within GFF6498at 75.165 kb on + strand, within GFF6498at 75.165 kb on + strand, within GFF6498at 75.165 kb on + strand, within GFF6498at 75.165 kb on + strand, within GFF6498at 75.166 kb on - strand, within GFF6498at 75.166 kb on - strand, within GFF6498at 75.166 kb on - strand, within GFF6498at 75.166 kb on - strand, within GFF6498at 75.321 kb on + strand, within GFF6498at 75.321 kb on + strand, within GFF6498at 75.447 kb on + strand, within GFF6498at 75.447 kb on + strand, within GFF6498at 75.448 kb on - strand, within GFF6498at 75.448 kb on - strand, within GFF6498at 75.492 kb on + strand, within GFF6498at 75.492 kb on + strand, within GFF6498at 75.492 kb on + strand, within GFF6498at 75.493 kb on - strand, within GFF6498at 75.493 kb on - strand, within GFF6498

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
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72,466 + GFF6496 0.55 -0.9
72,466 + GFF6496 0.55 +0.3
72,467 - GFF6496 0.55 -0.8
72,467 - GFF6496 0.55 -1.4
72,467 - GFF6496 0.55 -1.1
72,592 + GFF6496 0.63 +1.4
72,592 + GFF6496 0.63 -0.0
72,592 + GFF6496 0.63 +0.4
72,592 + GFF6496 0.63 +0.4
72,592 + GFF6496 0.63 -1.2
72,592 + GFF6496 0.63 -0.4
72,592 + GFF6496 0.63 -0.2
72,593 - GFF6496 0.63 -1.3
72,593 - GFF6496 0.63 -0.5
72,593 - GFF6496 0.63 -0.1
72,593 - GFF6496 0.63 +0.4
72,593 - GFF6496 0.63 +0.7
72,598 + GFF6496 0.63 -1.9
72,598 + GFF6496 0.63 -0.0
72,598 + GFF6496 0.63 +0.9
72,598 + GFF6496 0.63 -0.8
72,598 + GFF6496 0.63 +0.6
72,599 - GFF6496 0.63 -0.2
72,599 - GFF6496 0.63 +0.2
72,599 - GFF6496 0.63 -0.9
72,599 - GFF6496 0.63 -0.0
72,599 - GFF6496 0.63 +0.7
72,599 - GFF6496 0.63 -2.2
72,599 - GFF6496 0.63 -0.7
72,622 + GFF6496 0.64 -0.2
72,622 + GFF6496 0.64 -0.1
72,622 + GFF6496 0.64 +0.6
72,622 + GFF6496 0.64 +0.2
72,622 + GFF6496 0.64 +0.9
72,623 - GFF6496 0.64 +0.7
72,623 - GFF6496 0.64 -3.1
72,625 + GFF6496 0.64 +1.2
72,625 + GFF6496 0.64 +0.2
72,625 + GFF6496 0.64 +0.1
72,625 + GFF6496 0.64 -1.3
72,626 - GFF6496 0.65 +0.1
72,626 - GFF6496 0.65 +0.0
72,626 - GFF6496 0.65 -0.6
72,626 - GFF6496 0.65 -0.0
72,626 - GFF6496 0.65 -0.4
72,626 - GFF6496 0.65 -0.2
72,667 + GFF6496 0.67 -0.0
72,667 + GFF6496 0.67 -0.0
72,668 - GFF6496 0.67 -1.8
72,668 - GFF6496 0.67 +0.6
72,668 - GFF6496 0.67 -1.4
72,668 - GFF6496 0.67 -0.1
72,668 - GFF6496 0.67 +0.4
72,737 - GFF6496 0.71 -0.5
72,737 - GFF6496 0.71 -1.6
72,737 - GFF6496 0.71 +0.4
72,737 - GFF6496 0.71 +0.3
72,921 + GFF6496 0.82 -0.2
72,921 + GFF6496 0.82 +0.5
72,922 - GFF6496 0.82 -0.4
72,922 - GFF6496 0.82 -0.3
72,973 + GFF6496 0.85 -0.8
72,973 + GFF6496 0.85 +0.7
72,973 + GFF6496 0.85 -0.6
72,974 - GFF6496 0.85 -1.2
72,995 + GFF6496 0.86 -0.5
72,996 - GFF6496 0.86 -0.8
72,999 + GFF6496 0.86 -0.5
72,999 + GFF6496 0.86 +0.1
73,008 + GFF6496 0.87 -1.3
73,008 + GFF6496 0.87 +0.0
73,008 + GFF6496 0.87 +0.8
73,008 + GFF6496 0.87 -0.2
73,008 + GFF6496 0.87 +0.2
73,009 - GFF6496 0.87 -0.6
73,009 - GFF6496 0.87 +0.9
73,009 - GFF6496 0.87 +0.4
73,263 + +0.1
73,264 - -2.2
73,264 - +0.6
73,264 - -0.1
73,311 + -0.6
73,343 - -0.9
73,458 + -0.3
73,489 + +0.1
73,489 + -0.3
73,489 + +0.0
73,489 + +0.8
73,489 + -0.5
73,489 + +0.2
73,490 - +0.2
73,490 - +0.2
73,490 - +0.8
73,490 - +1.4
73,490 - -0.6
73,490 - -0.1
73,490 - -0.9
73,543 + GFF6497 0.10 -2.2
73,544 - GFF6497 0.10 -0.2
73,544 - GFF6497 0.10 -0.0
73,643 - GFF6497 0.18 -0.1
73,643 - GFF6497 0.18 +0.1
73,807 + GFF6497 0.32 -0.9
73,808 - GFF6497 0.32 +0.1
73,808 - GFF6497 0.32 -0.8
73,808 - GFF6497 0.32 -0.9
73,808 - GFF6497 0.32 -0.0
73,808 - GFF6497 0.32 +0.1
74,038 + GFF6497 0.51 +0.9
74,038 + GFF6497 0.51 -0.2
74,038 + GFF6497 0.51 -1.6
74,038 + GFF6497 0.51 +0.8
74,039 - GFF6497 0.51 -2.2
74,039 - GFF6497 0.51 +0.4
74,039 - GFF6497 0.51 -0.2
74,039 - GFF6497 0.51 -0.4
74,230 + GFF6497 0.67 -1.0
74,461 + GFF6497 0.86 -1.0
74,462 - GFF6497 0.86 -0.8
74,462 - GFF6497 0.86 -0.7
74,464 + GFF6497 0.86 -0.9
74,464 + GFF6497 0.86 +0.5
74,464 + GFF6497 0.86 -1.2
74,464 + GFF6497 0.86 -0.9
74,464 + GFF6497 0.86 -0.7
74,464 + GFF6497 0.86 +0.0
74,506 + GFF6497 0.90 +0.1
74,759 + +0.6
74,759 + -0.4
74,759 + -0.9
74,766 + +0.6
74,767 - -0.1
74,767 - +0.4
75,069 + GFF6498 0.19 +1.1
75,069 + GFF6498 0.19 -1.6
75,069 + GFF6498 0.19 +0.4
75,165 + GFF6498 0.25 -0.7
75,165 + GFF6498 0.25 -1.2
75,165 + GFF6498 0.25 -0.3
75,165 + GFF6498 0.25 -1.0
75,165 + GFF6498 0.25 -0.2
75,165 + GFF6498 0.25 -1.4
75,165 + GFF6498 0.25 -0.5
75,166 - GFF6498 0.25 +0.2
75,166 - GFF6498 0.25 +0.6
75,166 - GFF6498 0.25 +0.1
75,166 - GFF6498 0.25 -1.4
75,321 + GFF6498 0.35 -0.3
75,321 + GFF6498 0.35 +0.2
75,447 + GFF6498 0.42 -0.1
75,447 + GFF6498 0.42 +0.4
75,448 - GFF6498 0.42 +0.3
75,448 - GFF6498 0.42 +1.1
75,492 + GFF6498 0.45 +0.1
75,492 + GFF6498 0.45 -1.1
75,492 + GFF6498 0.45 -1.2
75,493 - GFF6498 0.45 -0.6
75,493 - GFF6498 0.45 -0.1

Or see this region's nucleotide sequence