Strain Fitness in Variovorax sp. SCN45 around GFF6420

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
94,062	+		GFF6419	0.32	-1.0
94,062	+		GFF6419	0.32	+0.5
94,062	+		GFF6419	0.32	+0.5
94,062	+		GFF6419	0.32	+0.5
94,062	+		GFF6419	0.32	-1.0
94,062	+		GFF6419	0.32	+0.2
94,062	+		GFF6419	0.32	-2.2
94,062	+		GFF6419	0.32	+1.0
94,062	+		GFF6419	0.32	-0.2
94,062	+		GFF6419	0.32	-0.1
94,062	+		GFF6419	0.32	-0.8
94,062	+		GFF6419	0.32	-1.5
94,062	+		GFF6419	0.32	+0.6
94,062	+		GFF6419	0.32	+0.2
94,062	+		GFF6419	0.32	+0.0
94,063	-		GFF6419	0.32	-0.8
94,063	-		GFF6419	0.32	-1.2
94,063	-		GFF6419	0.32	+0.0
94,063	-		GFF6419	0.32	-0.3
94,063	-		GFF6419	0.32	+0.0
94,063	-		GFF6419	0.32	-0.5
94,063	-		GFF6419	0.32	+0.0
94,063	-		GFF6419	0.32	+0.4
94,063	-		GFF6419	0.32	+1.0
94,063	-		GFF6419	0.32	+0.1
94,063	-		GFF6419	0.32	+0.2
94,063	-		GFF6419	0.32	-1.0
94,063	-		GFF6419	0.32	-1.1
94,063	-		GFF6419	0.32	+0.1
94,224	+		GFF6419	0.45	-1.0
94,224	+		GFF6419	0.45	+0.1
94,224	+		GFF6419	0.45	-0.1
94,224	+		GFF6419	0.45	-0.6
94,224	+		GFF6419	0.45	-0.2
94,224	+		GFF6419	0.45	-0.1
94,224	+		GFF6419	0.45	-0.7
94,224	+		GFF6419	0.45	-1.1
94,224	+		GFF6419	0.45	+0.1
94,224	+		GFF6419	0.45	+0.1
94,225	-		GFF6419	0.45	-0.4
94,225	-		GFF6419	0.45	+0.6
94,225	-		GFF6419	0.45	-0.3
94,225	-		GFF6419	0.45	+2.6
94,225	-		GFF6419	0.45	+0.5
94,225	-		GFF6419	0.45	-0.4
94,225	-		GFF6419	0.45	-0.8
94,225	-		GFF6419	0.45	+0.3
94,225	-		GFF6419	0.45	-0.2
94,225	-		GFF6419	0.45	-0.7
94,225	-		GFF6419	0.45	-0.2
94,458	+		GFF6419	0.65	-0.7
94,459	-		GFF6419	0.65	-1.3
94,459	-		GFF6419	0.65	+0.1
94,459	-		GFF6419	0.65	-0.3
94,506	+		GFF6419	0.69	+0.2
94,506	+		GFF6419	0.69	-0.3
94,506	+		GFF6419	0.69	-1.9
94,506	+		GFF6419	0.69	+0.3
94,506	+		GFF6419	0.69	-0.3
94,506	+		GFF6419	0.69	-0.5
94,506	+		GFF6419	0.69	+0.2
94,506	+		GFF6419	0.69	-0.0
94,506	+		GFF6419	0.69	+0.8
94,506	+		GFF6419	0.69	-0.2
94,506	+		GFF6419	0.69	+0.8
94,506	+		GFF6419	0.69	+0.2
94,506	+		GFF6419	0.69	-0.2
94,506	+		GFF6419	0.69	-1.5
94,506	+		GFF6419	0.69	-0.8
94,506	+		GFF6419	0.69	-0.6
94,506	+		GFF6419	0.69	-0.7
94,507	-		GFF6419	0.69	-0.9
94,507	-		GFF6419	0.69	-0.7
94,507	-		GFF6419	0.69	+0.2
94,507	-		GFF6419	0.69	-0.2
94,507	-		GFF6419	0.69	-0.1
94,507	-		GFF6419	0.69	-0.5
94,507	-		GFF6419	0.69	-0.1
94,507	-		GFF6419	0.69	-0.5
94,507	-		GFF6419	0.69	-0.6
94,507	-		GFF6419	0.69	+1.0
94,507	-		GFF6419	0.69	-0.3
94,507	-		GFF6419	0.69	-1.9
94,507	-		GFF6419	0.69	+0.7
94,507	-		GFF6419	0.69	+0.2
94,507	-		GFF6419	0.69	+0.4
94,507	-		GFF6419	0.69	+1.9
94,524	+		GFF6419	0.71	-1.2
94,524	+		GFF6419	0.71	+0.1
94,525	-		GFF6419	0.71	-0.7
94,525	-		GFF6419	0.71	-0.1
94,525	-		GFF6419	0.71	-0.2
94,539	+		GFF6419	0.72	-0.4
94,539	+		GFF6419	0.72	-0.2
94,539	+		GFF6419	0.72	-0.4
94,539	+		GFF6419	0.72	-0.0
94,540	-		GFF6419	0.72	-0.2
94,540	-		GFF6419	0.72	-0.3
94,540	-		GFF6419	0.72	-1.0
94,716	+		GFF6419	0.87	-0.3
94,716	+		GFF6419	0.87	+1.4
94,716	+		GFF6419	0.87	+0.6
94,716	+		GFF6419	0.87	-0.5
94,716	+		GFF6419	0.87	+1.5
94,716	+		GFF6419	0.87	+1.4
94,716	+		GFF6419	0.87	+0.1
94,717	-		GFF6419	0.87	-0.2
94,717	-		GFF6419	0.87	-2.0
94,717	-		GFF6419	0.87	-1.1
94,717	-		GFF6419	0.87	-0.4
94,717	-		GFF6419	0.87	+0.0
94,717	-		GFF6419	0.87	-0.3
94,717	-		GFF6419	0.87	+0.2
94,717	-		GFF6419	0.87	-1.2
94,717	-		GFF6419	0.87	-0.3
94,717	-		GFF6419	0.87	-0.1
94,717	-		GFF6419	0.87	+0.4
94,827	-				+0.0
94,883	-				-1.7
94,883	-				-0.1
94,883	-				-0.5
94,883	-				+0.5
94,915	+				-0.9
94,915	+				-1.3
94,915	+				-0.7
94,915	+				-0.1
94,916	-				-1.0
94,916	-				-0.2
94,916	-				+1.0
94,916	-				+0.3
94,960	-				-0.2
94,960	-				-0.5
94,996	+				-0.1
95,238	+		GFF6420	0.13	-0.3
95,238	+		GFF6420	0.13	-1.0
95,238	+		GFF6420	0.13	-0.6
95,238	+		GFF6420	0.13	-0.1
95,239	-		GFF6420	0.13	-0.6
95,239	-		GFF6420	0.13	+0.8
95,239	-		GFF6420	0.13	-0.9
95,239	-		GFF6420	0.13	+0.2
95,239	-		GFF6420	0.13	-0.8
95,280	+		GFF6420	0.16	-0.0
95,281	-		GFF6420	0.16	-0.0
95,281	-		GFF6420	0.16	-1.4
95,328	+		GFF6420	0.18	+0.6
95,328	+		GFF6420	0.18	+0.2
95,328	+		GFF6420	0.18	-0.3
95,328	+		GFF6420	0.18	-0.4
95,328	+		GFF6420	0.18	-0.9
95,328	+		GFF6420	0.18	-1.1
95,328	+		GFF6420	0.18	-0.2
95,328	+		GFF6420	0.18	+0.2
95,328	+		GFF6420	0.18	-0.5
95,328	+		GFF6420	0.18	-0.3
95,328	+		GFF6420	0.18	+1.1
95,328	+		GFF6420	0.18	+1.8
95,328	+		GFF6420	0.18	-1.5
95,329	-		GFF6420	0.19	-0.7
95,329	-		GFF6420	0.19	+0.5
95,329	-		GFF6420	0.19	-1.0
95,329	-		GFF6420	0.19	-0.3
95,329	-		GFF6420	0.19	+0.1
95,329	-		GFF6420	0.19	+0.3
95,329	-		GFF6420	0.19	-0.7
95,329	-		GFF6420	0.19	-0.5
95,329	-		GFF6420	0.19	+0.1
95,329	-		GFF6420	0.19	-0.7
95,329	-		GFF6420	0.19	+0.1
95,329	-		GFF6420	0.19	+0.6
95,329	-		GFF6420	0.19	-0.3
95,355	+		GFF6420	0.20	-0.0
95,355	+		GFF6420	0.20	-0.1
95,355	+		GFF6420	0.20	-0.9
95,356	-		GFF6420	0.20	-0.7
95,356	-		GFF6420	0.20	-1.2
95,364	+		GFF6420	0.21	+0.7
95,529	+		GFF6420	0.31	-1.0
95,529	+		GFF6420	0.31	-0.3
95,529	+		GFF6420	0.31	-0.5
95,530	-		GFF6420	0.31	-0.6
95,530	-		GFF6420	0.31	-1.4
95,530	-		GFF6420	0.31	+0.4
95,530	-		GFF6420	0.31	+1.5
95,530	-		GFF6420	0.31	-1.8
95,530	-		GFF6420	0.31	-0.8
95,530	-		GFF6420	0.31	-0.9
95,583	+		GFF6420	0.34	+0.8
95,637	+		GFF6420	0.38	+1.2
95,637	+		GFF6420	0.38	+1.3
95,637	+		GFF6420	0.38	-0.2
95,637	+		GFF6420	0.38	+0.5
95,637	+		GFF6420	0.38	-0.5
95,637	+		GFF6420	0.38	-0.8
95,637	+		GFF6420	0.38	-0.5
95,637	+		GFF6420	0.38	+0.6
95,637	+		GFF6420	0.38	+0.8
95,637	+		GFF6420	0.38	-0.6
95,638	-		GFF6420	0.38	-1.3
95,638	-		GFF6420	0.38	-1.8
95,638	-		GFF6420	0.38	+0.0
95,638	-		GFF6420	0.38	+0.3
95,638	-		GFF6420	0.38	-0.5
95,638	-		GFF6420	0.38	-0.0
95,638	-		GFF6420	0.38	-0.0
95,638	-		GFF6420	0.38	+0.8
95,638	-		GFF6420	0.38	+0.9
95,638	-		GFF6420	0.38	-0.5
95,638	-		GFF6420	0.38	-0.9
95,638	-		GFF6420	0.38	-1.1
95,638	-		GFF6420	0.38	+0.3
95,638	-		GFF6420	0.38	+0.0
95,638	-		GFF6420	0.38	-0.3
95,638	-		GFF6420	0.38	+0.1
95,638	-		GFF6420	0.38	-0.4
95,638	-		GFF6420	0.38	-0.5
95,638	-		GFF6420	0.38	+0.3
95,638	-		GFF6420	0.38	-0.1
95,679	+		GFF6420	0.40	-2.1
95,679	+		GFF6420	0.40	-0.3
95,679	+		GFF6420	0.40	-1.3
95,679	+		GFF6420	0.40	-1.1
95,679	+		GFF6420	0.40	-1.1
95,679	+		GFF6420	0.40	+0.1
95,679	+		GFF6420	0.40	-0.5
95,680	-		GFF6420	0.40	-0.6
95,680	-		GFF6420	0.40	-0.7
95,680	-		GFF6420	0.40	+0.0
95,680	-		GFF6420	0.40	-0.2
95,680	-		GFF6420	0.40	-0.0
95,680	-		GFF6420	0.40	-0.1
95,680	-		GFF6420	0.40	-0.2
95,790	+		GFF6420	0.47	-0.2
95,790	+		GFF6420	0.47	-1.1
95,790	+		GFF6420	0.47	-0.4
95,790	+		GFF6420	0.47	-1.5
95,790	+		GFF6420	0.47	-0.3
95,790	+		GFF6420	0.47	-0.5
95,790	+		GFF6420	0.47	-0.3
95,790	+		GFF6420	0.47	-0.4
95,790	+		GFF6420	0.47	+0.5
95,790	+		GFF6420	0.47	-0.3
95,790	+		GFF6420	0.47	-0.2
95,790	+		GFF6420	0.47	-1.2
95,790	+		GFF6420	0.47	+0.2
95,790	+		GFF6420	0.47	-0.8
95,790	+		GFF6420	0.47	-0.1
95,790	+		GFF6420	0.47	+0.1
95,790	+		GFF6420	0.47	-0.7
95,790	+		GFF6420	0.47	-0.7
95,790	+		GFF6420	0.47	-0.2
95,790	+		GFF6420	0.47	-0.7
95,791	-		GFF6420	0.47	+0.4
95,791	-		GFF6420	0.47	-0.1
95,791	-		GFF6420	0.47	-0.1
95,791	-		GFF6420	0.47	-0.2
95,791	-		GFF6420	0.47	-0.9
95,791	-		GFF6420	0.47	+1.0
95,791	-		GFF6420	0.47	-0.1
95,791	-		GFF6420	0.47	-0.7
95,791	-		GFF6420	0.47	+0.6
95,791	-		GFF6420	0.47	-0.8
95,791	-		GFF6420	0.47	-0.3
95,791	-		GFF6420	0.47	-0.1
95,791	-		GFF6420	0.47	+0.4
95,791	-		GFF6420	0.47	-0.1
95,791	-		GFF6420	0.47	+0.4
95,791	-		GFF6420	0.47	-1.2
95,791	-		GFF6420	0.47	-0.4
95,791	-		GFF6420	0.47	-0.8
95,791	-		GFF6420	0.47	-1.1
95,791	-		GFF6420	0.47	+0.6
95,791	-		GFF6420	0.47	+0.8
95,791	-		GFF6420	0.47	+0.2
95,791	-		GFF6420	0.47	-0.1
95,791	-		GFF6420	0.47	-0.4
95,875	-		GFF6420	0.52	-0.6
95,875	-		GFF6420	0.52	-0.6
95,875	-		GFF6420	0.52	-0.8
95,875	-		GFF6420	0.52	-0.4
95,875	-		GFF6420	0.52	-0.5
96,125	+		GFF6420	0.68	-0.9
96,126	+		GFF6420	0.68	-0.2
96,126	+		GFF6420	0.68	+0.3
96,126	+		GFF6420	0.68	-0.1
96,127	-		GFF6420	0.68	-0.2
96,127	-		GFF6420	0.68	-0.9
96,127	-		GFF6420	0.68	+0.3
96,162	+		GFF6420	0.70	-0.1
96,162	+		GFF6420	0.70	+0.0
96,162	+		GFF6420	0.70	-0.3
96,163	-		GFF6420	0.70	+0.8
96,177	+		GFF6420	0.71	-0.5
96,177	+		GFF6420	0.71	-1.2
96,177	+		GFF6420	0.71	-0.4
96,178	-		GFF6420	0.71	+0.4
96,178	-		GFF6420	0.71	-0.3
96,178	-		GFF6420	0.71	-0.4
96,178	-		GFF6420	0.71	+0.2
96,178	-		GFF6420	0.71	+0.5
96,264	+		GFF6420	0.77	-0.4
96,265	-		GFF6420	0.77	-0.8
96,265	-		GFF6420	0.77	+0.5
96,265	-		GFF6420	0.77	+0.6
96,265	-		GFF6420	0.77	+0.6
96,300	+		GFF6420	0.79	+1.8
96,309	+		GFF6420	0.79	+1.4
96,309	+		GFF6420	0.79	+1.2
96,309	+		GFF6420	0.79	-1.9
96,309	+		GFF6420	0.79	-0.2
96,309	+		GFF6420	0.79	-0.4
96,309	+		GFF6420	0.79	-2.3
96,309	+		GFF6420	0.79	+1.2
96,309	+		GFF6420	0.79	+1.2
96,309	+		GFF6420	0.79	-0.2
96,309	+		GFF6420	0.79	-0.3
96,309	+		GFF6420	0.79	-0.3
96,309	+		GFF6420	0.79	-0.8
96,309	+		GFF6420	0.79	+0.8
96,309	+		GFF6420	0.79	-0.4
96,309	+		GFF6420	0.79	+0.7
96,309	+		GFF6420	0.79	-0.0
96,309	+		GFF6420	0.79	-0.4
96,309	+		GFF6420	0.79	-0.9
96,309	+		GFF6420	0.79	-1.7
96,309	+		GFF6420	0.79	-0.8
96,309	+		GFF6420	0.79	-1.4
96,309	+		GFF6420	0.79	-0.2
96,309	+		GFF6420	0.79	-0.8
96,310	-		GFF6420	0.79	-0.4
96,310	-		GFF6420	0.79	-0.4
96,310	-		GFF6420	0.79	-0.8
96,310	-		GFF6420	0.79	-0.4
96,310	-		GFF6420	0.79	-0.4
96,310	-		GFF6420	0.79	+0.0
96,310	-		GFF6420	0.79	+0.2
96,310	-		GFF6420	0.79	+0.0
96,310	-		GFF6420	0.79	-0.7
96,310	-		GFF6420	0.79	+0.4
96,310	-		GFF6420	0.79	+0.3
96,310	-		GFF6420	0.79	-0.4
96,310	-		GFF6420	0.79	-0.7
96,310	-		GFF6420	0.79	+0.8
96,310	-		GFF6420	0.79	-1.5
96,310	-		GFF6420	0.79	+0.1
96,310	-		GFF6420	0.79	-0.5
96,310	-		GFF6420	0.79	-0.7
96,310	-		GFF6420	0.79	+0.1
96,310	-		GFF6420	0.79	-0.4
96,310	-		GFF6420	0.79	-0.8
96,310	-		GFF6420	0.79	-0.6
96,310	-		GFF6420	0.79	-0.6
96,760	+				+0.5
96,760	+				+0.4
96,760	+				-1.8
96,761	-				-0.9
96,761	-				-0.5
96,866	+				-0.3
96,866	+				-0.7
96,866	+				-2.0
96,866	+				+0.3
96,866	+				+0.5
96,866	+				-1.0
96,866	+				-0.8
96,867	-				+1.8
96,867	-				-0.9
96,867	-				+0.1
96,867	-				-0.8
96,867	-				-0.4
96,868	+				-1.2
97,150	+		GFF6421	0.17	+0.3
97,150	+		GFF6421	0.17	-0.2
97,150	+		GFF6421	0.17	-1.3
97,150	+		GFF6421	0.17	-0.7
97,150	+		GFF6421	0.17	-1.8
97,150	+		GFF6421	0.17	-1.0
97,151	-		GFF6421	0.17	-0.7
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